* using log directory ‘/srv/hornik/tmp/CRAN/aloom.Rcheck’ * using R Under development (unstable) (2023-11-28 r85645) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.5 (1) Debian flang-new version 17.0.5 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘aloom/DESCRIPTION’ ... OK * this is package ‘aloom’ version ‘0.1.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Damjan Krstajic ’ Days since last update: 1 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘aloom’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [1s/1s] ERROR Running examples in ‘aloom-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: aloom > ### Title: All Leave-One-Out Models > ### Aliases: aloom > > ### ** Examples > > > library(randomForest) randomForest 4.7-1.1 Type rfNews() to see new features/changes/bug fixes. > x1 <- matrix(rnorm(100 * 20), 100, 20) > x2 <- matrix(rnorm(30 * 20), 30, 20) > y1 <- as.factor(sample(c("POS","NEG"), 100, replace = TRUE)) > model.params <- list(ntree=100) > fit <- aloom(x1,y1,x2,method="rf",model.params) Error in .check_ncores(cores) : 32 simultaneous processes spawned Calls: aloom -> -> .check_ncores Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [1s/1s] ERROR Running ‘testthat.R’ [1s/1s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(aloom) > > test_check("aloom") randomForest 4.7-1.1 Type rfNews() to see new features/changes/bug fixes. [ FAIL 1 | WARN 0 | SKIP 0 | PASS 2 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_aloom_1.R:11:5'): check that all expected outputs are created ── Error in `.check_ncores(cores)`: 32 simultaneous processes spawned Backtrace: ▆ 1. └─aloom::aloom(x1, y1, x2, method = "rf", model.params) at test_aloom_1.R:11:5 2. └─parallel::mclapply(...) 3. └─parallel:::.check_ncores(cores) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 2 ] Error: Test failures Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 NOTE