Package: amregtest
Check: tests
New result: ERROR
    Running ‘testthat.R’ [244s/244s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > # This file is part of the standard setup for testthat.
    > # It is recommended that you do not modify it.
    > #
    > # Where should you do additional test configuration?
    > # Learn more about the roles of various files in:
    > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
    > # * https://testthat.r-lib.org/articles/special-files.html
    > 
    > library(testthat)
    > library(amregtest)
    Loading required package: allelematch
    Loading required package: dynamicTreeCut
    > 
    > test_check("amregtest")
    Saving _problems/test-allelematch_3-amPairwise_negative-45.R
    Cleaning up 1 leaked TEMP file(s):
      /home/hornik/tmp/scratch/RtmpwF6wvu/pdf1f9cb062814e42
    Cleaning up 1 leaked TEMP file(s):
      /home/hornik/tmp/scratch/RtmpwF6wvu/pdf1f9cb06ccef31f
    Cleaning up 1 leaked TEMP file(s):
      /home/hornik/tmp/scratch/RtmpwF6wvu/pdf1f9cb052c7a360
    Cleaning up 1 leaked TEMP file(s):
      /home/hornik/tmp/scratch/RtmpwF6wvu/pdf1f9cb02562b3d2
    Cleaning up 1 leaked TEMP file(s):
      /home/hornik/tmp/scratch/RtmpwF6wvu/pdf1f9cb02834279f
    [ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
    
    ══ Skipped tests (24) ══════════════════════════════════════════════════════════
    • On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
      'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
      'test-allelematch_2-amMatrix.R:90:1',
      'test-allelematch_2-amMatrix_negative.R:2:1',
      'test-allelematch_3-amPairwise.R:7:1',
      'test-allelematch_3-amPairwise.R:74:1',
      'test-allelematch_3-amPairwise_print.R:2:1',
      'test-allelematch_4-amCluster-Ex1.R:2:1',
      'test-allelematch_4-amCluster-Ex2.R:2:1',
      'test-allelematch_4-amCluster-Ex3.R:2:1',
      'test-allelematch_4-amCluster-Ex4.R:2:1',
      'test-allelematch_4-amCluster-Ex5.R:2:1',
      'test-allelematch_4-amCluster-amMini.R:2:1',
      'test-allelematch_4-amCluster_print.R:2:1',
      'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
      'test-allelematch_6-amUnique_print.R:2:1',
      'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
      'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
      'test-ggData.R:11:1'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
    Error: allelematch: please specify alleleMismatch OR matchThreshold
    Backtrace:
        ▆
     1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
     2. │ └─testthat:::expect_condition_matching_(...)
     3. │   └─testthat:::quasi_capture(...)
     4. │     ├─testthat (local) .capture(...)
     5. │     │ └─base::withCallingHandlers(...)
     6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
     7. └─allelematch::amPairwise(amdataOdd2)
    ── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
    Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
    Backtrace:
        ▆
     1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
     2. │ └─testthat:::expect_condition_matching_(...)
     3. │   └─testthat:::quasi_capture(...)
     4. │     ├─testthat (local) .capture(...)
     5. │     │ └─base::withCallingHandlers(...)
     6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
     7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
    
    [ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
    Error:
    ! Test failures.
    Execution halted