* installing *source* package ‘alcyon’ ... ** using staged installation -- The C compiler identification is Clang 18.1.8 -- The CXX compiler identification is Clang 18.1.8 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-18 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-18 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp=libomp (found version "5.1") -- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1") -- Found OpenMP: TRUE (found version "5.1") -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release /usr/bin/cmake -S/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs -B/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/CMakeFiles /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release' make -f CMakeFiles/alcyon_gensala.dir/build.make CMakeFiles/alcyon_gensala.dir/depend make[2]: Entering directory '/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release' cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release 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CMakeFiles/alcyon_gensala.dir/salalib/axialmodules/axiallocal.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/axialmodules/axialstepdepth.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmangular.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmmetric.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtopological.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtulip.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtopologicalpd.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmmetricpd.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtulipdepth.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmmetricshortestpath.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtopologicalshortestpath.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtulipshortestpath.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/parsers/ntfp.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/parsers/dxfp.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/parsers/mapinfodata.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/parsers/tigerp.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/agents/agent.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/agents/agentprogram.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/agents/agentga.cpp.o CMakeFiles/alcyon_gensala.dir/salalib/agents/agentanalysis.cpp.o /usr/bin/llvm-ranlib-18 libalcyon_gensala.a make[2]: Leaving directory '/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release' [ 49%] Built target alcyon_gensala make -f genlib/CMakeFiles/genlib.dir/build.make genlib/CMakeFiles/genlib.dir/depend make[2]: Entering directory '/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release' cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/genlib 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genlib/CMakeFiles/genlib.dir/xmlparse.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/genlib && /usr/bin/clang++-18 -std=gnu++17 -DGENLIB_LIBRARY -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -MD -MT genlib/CMakeFiles/genlib.dir/xmlparse.cpp.o -MF CMakeFiles/genlib.dir/xmlparse.cpp.o.d -o CMakeFiles/genlib.dir/xmlparse.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/genlib/xmlparse.cpp [ 53%] Linking CXX static library libgenlib.a cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/genlib && /usr/bin/cmake -P CMakeFiles/genlib.dir/cmake_clean_target.cmake cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/genlib && /usr/bin/cmake -E cmake_link_script CMakeFiles/genlib.dir/link.txt --verbose=1 /usr/bin/llvm-ar-18 qc libgenlib.a CMakeFiles/genlib.dir/bsptree.cpp.o 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-I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/linkutils.cpp.o -MF CMakeFiles/salalib.dir/linkutils.cpp.o.d -o CMakeFiles/salalib.dir/linkutils.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/linkutils.cpp [ 61%] Building CXX object salalib/CMakeFiles/salalib.dir/gridproperties.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/gridproperties.cpp.o -MF CMakeFiles/salalib.dir/gridproperties.cpp.o.d -o CMakeFiles/salalib.dir/gridproperties.cpp.o -c 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-I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/layermanagerimpl.cpp.o -MF CMakeFiles/salalib.dir/layermanagerimpl.cpp.o.d -o CMakeFiles/salalib.dir/layermanagerimpl.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/layermanagerimpl.cpp [ 63%] Building CXX object salalib/CMakeFiles/salalib.dir/attributetableview.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/attributetableview.cpp.o -MF CMakeFiles/salalib.dir/attributetableview.cpp.o.d -o CMakeFiles/salalib.dir/attributetableview.cpp.o -c 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-I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/point.cpp.o -MF CMakeFiles/salalib.dir/point.cpp.o.d -o CMakeFiles/salalib.dir/point.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/point.cpp [ 65%] Building CXX object salalib/CMakeFiles/salalib.dir/pafcolor.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/pafcolor.cpp.o -MF CMakeFiles/salalib.dir/pafcolor.cpp.o.d -o CMakeFiles/salalib.dir/pafcolor.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/pafcolor.cpp [ 66%] Building CXX object salalib/CMakeFiles/salalib.dir/alllinemap.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/alllinemap.cpp.o -MF CMakeFiles/salalib.dir/alllinemap.cpp.o.d -o CMakeFiles/salalib.dir/alllinemap.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/alllinemap.cpp [ 66%] Building CXX object salalib/CMakeFiles/salalib.dir/axialminimiser.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra 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/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/tidylines.cpp.o -MF CMakeFiles/salalib.dir/tidylines.cpp.o.d -o CMakeFiles/salalib.dir/tidylines.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/tidylines.cpp [ 68%] Building CXX object salalib/CMakeFiles/salalib.dir/mapconverter.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/mapconverter.cpp.o -MF CMakeFiles/salalib.dir/mapconverter.cpp.o.d -o CMakeFiles/salalib.dir/mapconverter.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/mapconverter.cpp [ 69%] Building CXX object salalib/CMakeFiles/salalib.dir/importutils.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/importutils.cpp.o -MF CMakeFiles/salalib.dir/importutils.cpp.o.d -o CMakeFiles/salalib.dir/importutils.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/importutils.cpp [ 70%] Building CXX object salalib/CMakeFiles/salalib.dir/attributetableindex.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/attributetableindex.cpp.o -MF CMakeFiles/salalib.dir/attributetableindex.cpp.o.d -o CMakeFiles/salalib.dir/attributetableindex.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/attributetableindex.cpp [ 70%] Building CXX object salalib/CMakeFiles/salalib.dir/salashape.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/salashape.cpp.o -MF CMakeFiles/salalib.dir/salashape.cpp.o.d -o CMakeFiles/salalib.dir/salashape.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/salashape.cpp [ 71%] Building CXX object salalib/CMakeFiles/salalib.dir/shapemapgroupdata.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/shapemapgroupdata.cpp.o -MF CMakeFiles/salalib.dir/shapemapgroupdata.cpp.o.d -o CMakeFiles/salalib.dir/shapemapgroupdata.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/shapemapgroupdata.cpp [ 71%] Building CXX object salalib/CMakeFiles/salalib.dir/pushvalues.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/pushvalues.cpp.o -MF CMakeFiles/salalib.dir/pushvalues.cpp.o.d -o CMakeFiles/salalib.dir/pushvalues.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/pushvalues.cpp [ 72%] Building CXX object salalib/CMakeFiles/salalib.dir/exportutils.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/exportutils.cpp.o -MF CMakeFiles/salalib.dir/exportutils.cpp.o.d -o CMakeFiles/salalib.dir/exportutils.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/exportutils.cpp [ 73%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgaisovist.cpp [ 73%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgaangular.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgaangular.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgaangular.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgaangular.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgaangular.cpp [ 74%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgametric.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgametric.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgametric.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgametric.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgametric.cpp [ 75%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgathroughvision.cpp [ 75%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgavisuallocal.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgavisuallocal.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgavisuallocal.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgavisuallocal.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgavisuallocal.cpp [ 76%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgavisualglobal.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall 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salalib/CMakeFiles/salalib.dir/vgamodules/vgametricshortestpathtomany.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgametricshortestpathtomany.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgametricshortestpathtomany.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgametricshortestpathtomany.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgametricshortestpathtomany.cpp [ 83%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgametricshortestpath.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP 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salalib/CMakeFiles/salalib.dir/vgamodules/vgaangularshortestpath.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgaangularshortestpath.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgaangularshortestpath.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgaangularshortestpath.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgaangularshortestpath.cpp [ 85%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/extractlinkdata.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES 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89%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmtopological.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmtopological.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmtopological.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmtopological.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/segmmodules/segmtopological.cpp [ 90%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES 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salalib/CMakeFiles/salalib.dir/parsers/ntfp.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/parsers/ntfp.cpp.o -MF CMakeFiles/salalib.dir/parsers/ntfp.cpp.o.d -o CMakeFiles/salalib.dir/parsers/ntfp.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/parsers/ntfp.cpp [ 95%] Building CXX object salalib/CMakeFiles/salalib.dir/parsers/dxfp.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra 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salalib/CMakeFiles/salalib.dir/parsers/tigerp.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/parsers/tigerp.cpp.o -MF CMakeFiles/salalib.dir/parsers/tigerp.cpp.o.d -o CMakeFiles/salalib.dir/parsers/tigerp.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/parsers/tigerp.cpp [ 97%] Building CXX object salalib/CMakeFiles/salalib.dir/agents/agent.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra 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salalib/CMakeFiles/salalib.dir/agents/agentga.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall -Wextra -fopenmp=libomp -MD -MT salalib/CMakeFiles/salalib.dir/agents/agentga.cpp.o -MF CMakeFiles/salalib.dir/agents/agentga.cpp.o.d -o CMakeFiles/salalib.dir/agents/agentga.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/agents/agentga.cpp [ 99%] Building CXX object salalib/CMakeFiles/salalib.dir/agents/agentanalysis.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -D_USE_MATH_DEFINES -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -Wall 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-I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c main.cpp -o build-Release/main.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c communicator.cpp -o build-Release/communicator.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c ShapeMap.cpp -o build-Release/ShapeMap.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c ShapeGraph.cpp -o build-Release/ShapeGraph.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c AllLineMap.cpp -o build-Release/AllLineMap.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c PointMap.cpp -o build-Release/PointMap.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c convertInternal.cpp -o build-Release/convertInternal.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c convertExternal.cpp -o build-Release/convertExternal.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c axialAnalysis.cpp -o build-Release/axialAnalysis.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c segmentAnalysis.cpp -o build-Release/segmentAnalysis.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c segmentDepth.cpp -o build-Release/segmentDepth.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c segmentShortestPath.cpp -o build-Release/segmentShortestPath.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c metagraphdata.cpp -o build-Release/metagraphdata.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c isovist.cpp -o build-Release/isovist.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c allFewest.cpp -o build-Release/allFewest.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c vga.cpp -o build-Release/vga.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c vgaDepth.cpp -o build-Release/vgaDepth.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c vgaShortestPath.cpp -o build-Release/vgaShortestPath.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c agentAnalysis.cpp -o build-Release/agentAnalysis.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c link.cpp -o build-Release/link.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c RcppExports.cpp -o build-Release/RcppExports.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o alcyon.so build-Release/main.o build-Release/communicator.o build-Release/ShapeMap.o build-Release/ShapeGraph.o build-Release/AllLineMap.o build-Release/PointMap.o build-Release/convertInternal.o build-Release/convertExternal.o build-Release/axialAnalysis.o build-Release/segmentAnalysis.o build-Release/segmentDepth.o build-Release/segmentShortestPath.o build-Release/metagraphdata.o build-Release/isovist.o build-Release/allFewest.o build-Release/vga.o build-Release/vgaDepth.o build-Release/vgaShortestPath.o build-Release/agentAnalysis.o build-Release/link.o build-Release/RcppExports.o build-Release/libalcyon_gensala.a -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN/alcyon.Rcheck/00LOCK-alcyon/00new/alcyon/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alcyon)