* installing *source* package ‘alcyon’ ... ** using staged installation -- The C compiler identification is Clang 18.1.5 -- The CXX compiler identification is Clang 18.1.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-18 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-18 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.7s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release /usr/bin/cmake -S/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs -B/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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[ 38%] Building CXX object CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtopological.cpp.o /usr/bin/clang++-18 -std=gnu++17 -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtopological.cpp.o -MF CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtopological.cpp.o.d -o CMakeFiles/alcyon_gensala.dir/salalib/segmmodules/segmtopological.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/segmmodules/segmtopological.cpp /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/segmmodules/segmtopological.cpp:108:16: warning: variable 'totalmetdepth' set but not used [-Wunused-but-set-variable] 108 | totalmetdepth = 0.0; | ^ 1 warning generated. 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-I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/connector.cpp.o -MF CMakeFiles/salalib.dir/connector.cpp.o.d -o CMakeFiles/salalib.dir/connector.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/connector.cpp [ 56%] Building CXX object salalib/CMakeFiles/salalib.dir/isovist.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/isovist.cpp.o -MF CMakeFiles/salalib.dir/isovist.cpp.o.d -o CMakeFiles/salalib.dir/isovist.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/isovist.cpp [ 57%] Building CXX object salalib/CMakeFiles/salalib.dir/mgraph.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/mgraph.cpp.o -MF CMakeFiles/salalib.dir/mgraph.cpp.o.d -o CMakeFiles/salalib.dir/mgraph.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/mgraph.cpp [ 58%] Building CXX object salalib/CMakeFiles/salalib.dir/ngraph.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/ngraph.cpp.o -MF CMakeFiles/salalib.dir/ngraph.cpp.o.d -o CMakeFiles/salalib.dir/ngraph.cpp.o -c 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[ 60%] Building CXX object salalib/CMakeFiles/salalib.dir/salaprogram.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/salaprogram.cpp.o -MF CMakeFiles/salalib.dir/salaprogram.cpp.o.d -o CMakeFiles/salalib.dir/salaprogram.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/salaprogram.cpp [ 60%] Building CXX object salalib/CMakeFiles/salalib.dir/shapemap.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/shapemap.cpp.o -MF CMakeFiles/salalib.dir/shapemap.cpp.o.d -o CMakeFiles/salalib.dir/shapemap.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/shapemap.cpp /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/shapemap.cpp:3404:9: warning: variable 'k' set but not used [-Wunused-but-set-variable] 3404 | int k = -1; | ^ 1 warning generated. [ 61%] Building CXX object salalib/CMakeFiles/salalib.dir/spacepix.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/spacepix.cpp.o -MF CMakeFiles/salalib.dir/spacepix.cpp.o.d -o CMakeFiles/salalib.dir/spacepix.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/spacepix.cpp [ 62%] Building CXX object salalib/CMakeFiles/salalib.dir/sparksieve2.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/sparksieve2.cpp.o -MF CMakeFiles/salalib.dir/sparksieve2.cpp.o.d -o CMakeFiles/salalib.dir/sparksieve2.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/sparksieve2.cpp [ 63%] Building CXX object salalib/CMakeFiles/salalib.dir/entityparsing.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/entityparsing.cpp.o -MF CMakeFiles/salalib.dir/entityparsing.cpp.o.d -o CMakeFiles/salalib.dir/entityparsing.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/entityparsing.cpp [ 64%] Building CXX object salalib/CMakeFiles/salalib.dir/linkutils.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/linkutils.cpp.o -MF CMakeFiles/salalib.dir/linkutils.cpp.o.d -o CMakeFiles/salalib.dir/linkutils.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/linkutils.cpp [ 65%] Building CXX object salalib/CMakeFiles/salalib.dir/gridproperties.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/gridproperties.cpp.o -MF CMakeFiles/salalib.dir/gridproperties.cpp.o.d -o CMakeFiles/salalib.dir/gridproperties.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/gridproperties.cpp [ 65%] Building CXX object salalib/CMakeFiles/salalib.dir/attributetable.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/attributetable.cpp.o -MF CMakeFiles/salalib.dir/attributetable.cpp.o.d -o CMakeFiles/salalib.dir/attributetable.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/attributetable.cpp [ 66%] Building CXX object salalib/CMakeFiles/salalib.dir/layermanagerimpl.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/layermanagerimpl.cpp.o -MF CMakeFiles/salalib.dir/layermanagerimpl.cpp.o.d -o CMakeFiles/salalib.dir/layermanagerimpl.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/layermanagerimpl.cpp [ 67%] Building CXX object salalib/CMakeFiles/salalib.dir/attributetableview.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/attributetableview.cpp.o -MF CMakeFiles/salalib.dir/attributetableview.cpp.o.d -o CMakeFiles/salalib.dir/attributetableview.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/attributetableview.cpp [ 68%] Building CXX object salalib/CMakeFiles/salalib.dir/geometrygenerators.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/geometrygenerators.cpp.o -MF CMakeFiles/salalib.dir/geometrygenerators.cpp.o.d -o CMakeFiles/salalib.dir/geometrygenerators.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/geometrygenerators.cpp [ 69%] Building CXX object salalib/CMakeFiles/salalib.dir/point.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/point.cpp.o -MF CMakeFiles/salalib.dir/point.cpp.o.d -o CMakeFiles/salalib.dir/point.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/point.cpp [ 69%] Building CXX object salalib/CMakeFiles/salalib.dir/pafcolor.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/pafcolor.cpp.o -MF CMakeFiles/salalib.dir/pafcolor.cpp.o.d -o CMakeFiles/salalib.dir/pafcolor.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/pafcolor.cpp [ 70%] Building CXX object salalib/CMakeFiles/salalib.dir/spacepixfile.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/spacepixfile.cpp.o -MF CMakeFiles/salalib.dir/spacepixfile.cpp.o.d -o CMakeFiles/salalib.dir/spacepixfile.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/spacepixfile.cpp [ 71%] Building CXX object salalib/CMakeFiles/salalib.dir/alllinemap.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/alllinemap.cpp.o -MF CMakeFiles/salalib.dir/alllinemap.cpp.o.d -o CMakeFiles/salalib.dir/alllinemap.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/alllinemap.cpp /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/alllinemap.cpp:109:9: warning: variable 'removed' set but not used [-Wunused-but-set-variable] 109 | int removed = 0; // for testing purposes | ^ 1 warning generated. [ 72%] Building CXX object salalib/CMakeFiles/salalib.dir/axialminimiser.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/axialminimiser.cpp.o -MF CMakeFiles/salalib.dir/axialminimiser.cpp.o.d -o CMakeFiles/salalib.dir/axialminimiser.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/axialminimiser.cpp [ 73%] Building CXX object salalib/CMakeFiles/salalib.dir/axialpolygons.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/axialpolygons.cpp.o -MF CMakeFiles/salalib.dir/axialpolygons.cpp.o.d -o CMakeFiles/salalib.dir/axialpolygons.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/axialpolygons.cpp [ 73%] Building CXX object salalib/CMakeFiles/salalib.dir/tidylines.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/tidylines.cpp.o -MF CMakeFiles/salalib.dir/tidylines.cpp.o.d -o CMakeFiles/salalib.dir/tidylines.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/tidylines.cpp [ 74%] Building CXX object salalib/CMakeFiles/salalib.dir/mapconverter.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/mapconverter.cpp.o -MF CMakeFiles/salalib.dir/mapconverter.cpp.o.d -o CMakeFiles/salalib.dir/mapconverter.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/mapconverter.cpp [ 75%] Building CXX object salalib/CMakeFiles/salalib.dir/importutils.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/importutils.cpp.o -MF CMakeFiles/salalib.dir/importutils.cpp.o.d -o CMakeFiles/salalib.dir/importutils.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/importutils.cpp [ 76%] Building CXX object salalib/CMakeFiles/salalib.dir/attributetableindex.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/attributetableindex.cpp.o -MF CMakeFiles/salalib.dir/attributetableindex.cpp.o.d -o CMakeFiles/salalib.dir/attributetableindex.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/attributetableindex.cpp [ 77%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgaisovist.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgaisovist.cpp [ 78%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgaangular.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgaangular.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgaangular.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgaangular.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgaangular.cpp [ 78%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgametric.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgametric.cpp.o -MF CMakeFiles/salalib.dir/vgamodules/vgametric.cpp.o.d -o CMakeFiles/salalib.dir/vgamodules/vgametric.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/vgamodules/vgametric.cpp [ 79%] Building CXX object salalib/CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/vgamodules/vgathroughvision.cpp.o -MF 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salalib/CMakeFiles/salalib.dir/axialmodules/axialstepdepth.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/axialmodules/axialstepdepth.cpp.o -MF CMakeFiles/salalib.dir/axialmodules/axialstepdepth.cpp.o.d -o CMakeFiles/salalib.dir/axialmodules/axialstepdepth.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/axialmodules/axialstepdepth.cpp [ 86%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmangular.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmangular.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmangular.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmangular.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/segmmodules/segmangular.cpp [ 87%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmmetric.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmmetric.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmmetric.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmmetric.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/segmmodules/segmmetric.cpp 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[ 89%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o -MF CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o.d -o CMakeFiles/salalib.dir/segmmodules/segmtulip.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/segmmodules/segmtulip.cpp [ 90%] Building CXX object salalib/CMakeFiles/salalib.dir/segmmodules/segmtopologicalpd.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD 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/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/agents/agentengine.cpp.o -MF CMakeFiles/salalib.dir/agents/agentengine.cpp.o.d -o CMakeFiles/salalib.dir/agents/agentengine.cpp.o -c /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/salalib/agents/agentengine.cpp [ 99%] Building CXX object salalib/CMakeFiles/salalib.dir/agents/agentga.cpp.o cd /srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/build-Release/salalib && /usr/bin/clang++-18 -std=gnu++17 -DSALALIB_LIBRARY -D_DEPTHMAP -I/srv/hornik/tmp/CRAN/alcyon.Rcheck/00_pkg_src/alcyon/src/libs/. -g -O3 -Wall -pedantic -O3 -DNDEBUG -std=gnu++17 -fPIC -MD -MT salalib/CMakeFiles/salalib.dir/agents/agentga.cpp.o -MF CMakeFiles/salalib.dir/agents/agentga.cpp.o.d -o 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-I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c ShapeGraph.cpp -o build-Release/ShapeGraph.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c AllLineMap.cpp -o build-Release/AllLineMap.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c PointMap.cpp -o build-Release/PointMap.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c convertInternal.cpp -o build-Release/convertInternal.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c convertExternal.cpp -o build-Release/convertExternal.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c axialAnalysis.cpp -o build-Release/axialAnalysis.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c segmentAnalysis.cpp -o build-Release/segmentAnalysis.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c metagraphdata.cpp -o build-Release/metagraphdata.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c isovist.cpp -o build-Release/isovist.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c allFewest.cpp -o build-Release/allFewest.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -c vga.cpp -o build-Release/vga.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I../src/libs 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build-Release/RcppExports.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o alcyon.so build-Release/main.o build-Release/communicator.o build-Release/ShapeMap.o build-Release/ShapeGraph.o build-Release/AllLineMap.o build-Release/PointMap.o build-Release/convertInternal.o build-Release/convertExternal.o build-Release/axialAnalysis.o build-Release/segmentAnalysis.o build-Release/metagraphdata.o build-Release/isovist.o build-Release/allFewest.o build-Release/vga.o build-Release/agentAnalysis.o build-Release/link.o build-Release/RcppExports.o build-Release/libalcyon_gensala.a -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /srv/hornik/tmp/CRAN/alcyon.Rcheck/00LOCK-alcyon/00new/alcyon/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alcyon)