* using log directory 'd:/RCompile/CRANincoming/R-devel/aggreCAT.Rcheck'
* using R Under development (unstable) (2026-04-29 r89977 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-05-02 19:00:59 UTC
* checking for file 'aggreCAT/DESCRIPTION' ... OK
* this is package 'aggreCAT' version '1.0.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] NOTE
Maintainer: 'David Wilkinson <david.wilkinson.research@gmail.com>'

Found the following (possibly) invalid URLs:
  URL: 
    From: inst/doc/aggreCAT.pdf
    Message: Empty URL
  URL: http://r4ds.had.co.nz/ (moved to https://r4ds.had.co.nz/)
    From: inst/doc/aggreCAT.pdf
    Status: 301
    Message: Moved Permanently
  URL: http://www.foastat.org/ (moved to https://www.foastat.org/)
    From: inst/doc/aggreCAT.pdf
    Status: 301
    Message: Moved Permanently
  URL: http://www.jstatsoft.org/ (moved to https://www.jstatsoft.org/)
    From: inst/doc/aggreCAT.pdf
    Status: 301
    Message: Moved Permanently
  URL: https://doi.org/10.18637/jss.v000.i00
    From: inst/doc/aggreCAT.pdf
    Status: 404
    Message: Not Found
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'aggreCAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [41s] OK
  Running 'testthat.R' [41s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Undefined control sequence.
<argument> ...displaystyle 0, \text { for } x \lt 
                                                  0 \cr \displaystyle \frac ...
l.652 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ...}\cdot x, \text { for } 0 \le x \lt 
                                                  q_{5,i}\cr \displaystyle \...
l.652 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ....05, \text { for } q_{5,i}\le x \lt 
                                                  q_{50,i}\cr \displaystyle ...
l.652 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ....5, \text { for } q_{50,i}\le x \lt 
                                                  q_{95,i}\cr \displaystyle ...
l.652 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ...95, \text { for } q_{95,i}\le x \lt 
                                                  1\cr \displaystyle 1, \tex...
l.652 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ...displaystyle 0, \text { for } x \lt 
                                                  L_{i} \cr \displaystyle \f...
l.676 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ...t )}, \text { for } L_{i} \le x \lt 
                                                  B_{i}\cr \displaystyle 1 -...
l.676 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ...t )}, \text { for } B_{i} \le x \lt 
                                                  U_{i}\cr \displaystyle 1, ...
l.676 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ...ac {1}{N} \sum _{i=1}^N B_{i,c} \lt 
                                                  \textit {cutoff\_lower} \c...
l.773 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ...ac {1}{N} \sum _{i=1}^N B_{i,c} \gt 
                                                  \textit {cutoff\_upper} \c...
l.773 \end{cases}}{}
                    
! Undefined control sequence.
<argument> ...\displaystyle &\ for\ (B1_{i,c} \gt 
                                                  0.5\ and\ B_{i,c} \le 0.5)...
l.1311 \end{cases}}{}
                     
! Undefined control sequence.
<argument> ...cr \displaystyle &\ or\ B_{i,c} \lt 
                                                  B1_{i,c} \le 0.5\ or\ B1_{...
l.1311 \end{cases}}{}
                     
! Undefined control sequence.
<argument> ... B1_{i,c} \le 0.5\ or\ B1_{i,c} \gt 
                                                  B_{i,c} \gt 0.5 \end {alig...
l.1311 \end{cases}}{}
                     
! Undefined control sequence.
<argument> ...e 0.5\ or\ B1_{i,c} \gt B_{i,c} \gt 
                                                  0.5 \end {aligned} \cr \fr...
l.1311 \end{cases}}{}
                     
! Undefined control sequence.
<argument> ...\displaystyle &\ for\ (B1_{i,c} \lt 
                                                  0.5\ and\ B_{i,c} \ge 0.5)...
l.1311 \end{cases}}{}
                     
! Undefined control sequence.
<argument> ...r \displaystyle &\ or\ B1_{i,c} \lt 
                                                  B_{i,c} \lt 0.5\ or\ B_{i,...
l.1311 \end{cases}}{}
                     
! Undefined control sequence.
<argument> ...yle &\ or\ B1_{i,c} \lt B_{i,c} \lt 
                                                  0.5\ or\ B_{i,c} \gt B1_{i...
l.1311 \end{cases}}{}
                     
! Undefined control sequence.
<argument> ...lt B_{i,c} \lt 0.5\ or\ B_{i,c} \gt 
                                                  B1_{i,c} \gt 0.5. \end {al...
l.1311 \end{cases}}{}
                     
! Undefined control sequence.
<argument> ...t 0.5\ or\ B_{i,c} \gt B1_{i,c} \gt 
                                                  0.5. \end {aligned} \end {...
l.1311 \end{cases}}{}
                     
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE