Warning: SystemRequirements specified C++14: support has been removed
* installing *source* package ‘agcounts’ ...
** this is package ‘agcounts’ version ‘0.7.0’
** using staged installation
** libs
specified C++14
using C++ compiler: ‘g++-16 (Debian 16.1.0-1) 16.1.0’
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-16/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-16/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gcalibrate.cpp -o gcalibrate.o
gcalibrate.cpp: In function ‘double calcRes(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::DoubleVector)’:
gcalibrate.cpp:69:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   69 |   for(int i = 0; i < m.n_cols; i++){
      |                  ~~^~~~~~~~~~
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-16/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c resample_helpers.cpp -o resample_helpers.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-16/lib -Wl,-O1 -o agcounts.so RcppExports.o gcalibrate.o resample_helpers.o -L/home/hornik/tmp/R-d-gcc-16/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/agcounts.Rcheck/00LOCK-agcounts/00new/agcounts/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (agcounts)