R Under development (unstable) (2025-12-13 r89166 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(afex)
Loading required package: lme4
Loading required package: Matrix
************
Welcome to afex. For support visit: http://afex.singmann.science/
- Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
- Methods for calculating p-values with mixed(): 'S', 'KR', 'LRT', and 'PB'
- 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
- Get and set global package options with: afex_options()
- Set sum-to-zero contrasts globally: set_sum_contrasts()
- For example analyses see: browseVignettes("afex")
************

Attaching package: 'afex'

The following object is masked from 'package:lme4':

    lmer

> 
> test_check("afex")
Mixed Model Anova Table (Type 3 tests, S-method)

Model: value ~ treatment + (1 | id)
Data: obk.long
     Effect       df      F p.value
1 treatment 2, 13.00 2.91 +    .090
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, S-method)

Model: value ~ treatment + phase + (1 | id)
Data: obk.long
     Effect        df         F p.value
1 treatment  2, 13.00    2.91 +    .090
2     phase 2, 222.00 38.48 ***   <.001
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, LRT-method)

Model: value ~ treatment + (1 | id)
Data: obk.long
Df full model: 5
     Effect df  Chisq p.value
1 treatment  2 5.93 +    .052
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, LRT-method)

Model: value ~ treatment + phase + (1 | id)
Data: obk.long
Df full model: 7
     Effect df     Chisq p.value
1 treatment  2    5.93 +    .052
2     phase  2 66.67 ***   <.001
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
[ FAIL 0 | WARN 2 | SKIP 29 | PASS 348 ]

══ Skipped tests (29) ══════════════════════════════════════════════════════════
• On CRAN (27): 'test-afex_plot-basics.R:14:3',
  'test-afex_plot-basics.R:108:3', 'test-afex_plot-basics.R:141:1',
  'test-afex_plot-basics.R:508:3', 'test-afex_plot-basics.R:526:3',
  'test-afex_plot-bugs.R:5:3', 'test-afex_plot-bugs.R:23:3',
  'test-afex_plot-bugs.R:44:3', 'test-afex_plot-bugs.R:68:1',
  'test-afex_plot-default-support.R:3:1',
  'test-afex_plot-default-support.R:20:3',
  'test-afex_plot-default-support.R:42:3',
  'test-afex_plot-default-support.R:59:1', 'test-afex_plot-vignette.R:4:3',
  'test-afex_plot-vignette.R:41:3', 'test-afex_plot-vignette.R:135:3',
  'test-aov_car-bugs.R:449:3', 'test-emmeans-interface.R:217:3',
  'test-emmeans-interface.R:321:3', 'test-mixed-bugs.R:4:3',
  'test-mixed-bugs.R:17:3', 'test-mixed-structure.R:387:5',
  'test-mixed-structure.R:434:3', 'test-mixed-structure.R:478:3',
  'test-mixed-structure.R:536:3', 'test-mixed-structure.R:611:3',
  'test-mixed-structure.R:641:3'
• empty test (1): 'test-mixed-structure.R:142:1'
• {ggpol} is not installed (1): 'test-afex_plot-basics.R:174:3'

[ FAIL 0 | WARN 2 | SKIP 29 | PASS 348 ]
Deleting unused snapshots:
'afex_plot-basics/afex-plot-connecting-individual-points-works.svg',
'afex_plot-basics/geoms-work-box-plot.svg',
'afex_plot-basics/geoms-work-geom-count.svg',
'afex_plot-basics/geoms-work-ggbeeswarm-geom-beeswarm.svg',
'afex_plot-basics/geoms-work-ggbeeswarm-geom-quasirandom.svg',
'afex_plot-basics/geoms-work-jitterdodge.svg',
'afex_plot-basics/geoms-work-violin-with-colour.svg',
'afex_plot-basics/geoms-work-violin.svg', 'afex_plot-basics/mixed-model-1.svg',
'afex_plot-basics/mixed-model-2.svg', 'afex_plot-basics/mixed-model-3.svg',
'afex_plot-basics/mixed-model-4.svg',
'afex_plot-basics/multiple-geoms-work-1.svg',
'afex_plot-basics/multiple-geoms-work-2.svg',
'afex_plot-basics/one-way-within.svg',
'afex_plot-basics/plot-first-for-afex-plot-works-1.svg',
'afex_plot-basics/plot-first-for-afex-plot-works-2.svg',
'afex_plot-basics/plot-first-for-afex-plot-works-3.svg', …,
'afex_plot-vignette/afex-plot-glmmtmb-2.svg', and
'afex_plot-vignette/afex-plot-glmmtmb-3.svg'
> 
> proc.time()
   user  system elapsed 
  39.56    1.70   41.25