R Under development (unstable) (2025-08-23 r88688 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(afex) Loading required package: lme4 Loading required package: Matrix ************ Welcome to afex. For support visit: http://afex.singmann.science/ - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4() - Methods for calculating p-values with mixed(): 'S', 'KR', 'LRT', and 'PB' - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests - Get and set global package options with: afex_options() - Set sum-to-zero contrasts globally: set_sum_contrasts() - For example analyses see: browseVignettes("afex") ************ Attaching package: 'afex' The following object is masked from 'package:lme4': lmer > > test_check("afex") Mixed Model Anova Table (Type 3 tests, S-method) Model: value ~ treatment + (1 | id) Data: obk.long Effect df F p.value 1 treatment 2, 13.00 2.91 + .090 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 Mixed Model Anova Table (Type 3 tests, S-method) Model: value ~ treatment + phase + (1 | id) Data: obk.long Effect df F p.value 1 treatment 2, 13.00 2.91 + .090 2 phase 2, 222.00 38.48 *** <.001 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 Mixed Model Anova Table (Type 3 tests, LRT-method) Model: value ~ treatment + (1 | id) Data: obk.long Df full model: 5 Effect df Chisq p.value 1 treatment 2 5.93 + .052 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 Mixed Model Anova Table (Type 3 tests, LRT-method) Model: value ~ treatment + phase + (1 | id) Data: obk.long Df full model: 7 Effect df Chisq p.value 1 treatment 2 5.93 + .052 2 phase 2 66.67 *** <.001 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 [ FAIL 0 | WARN 0 | SKIP 29 | PASS 339 ] ══ Skipped tests (29) ══════════════════════════════════════════════════════════ • On CRAN (28): 'test-afex_plot-basics.R:14:3', 'test-afex_plot-basics.R:108:3', 'test-afex_plot-basics.R:151:3', 'test-afex_plot-basics.R:177:3', 'test-afex_plot-basics.R:508:3', 'test-afex_plot-basics.R:526:3', 'test-afex_plot-bugs.R:5:3', 'test-afex_plot-bugs.R:23:3', 'test-afex_plot-bugs.R:44:3', 'test-afex_plot-bugs.R:87:3', 'test-afex_plot-default-support.R:11:3', 'test-afex_plot-default-support.R:20:3', 'test-afex_plot-default-support.R:42:3', 'test-afex_plot-default-support.R:75:3', 'test-afex_plot-vignette.R:4:3', 'test-afex_plot-vignette.R:41:3', 'test-afex_plot-vignette.R:135:3', 'test-aov_car-bugs.R:449:3', 'test-emmeans-interface.R:217:3', 'test-emmeans-interface.R:321:3', 'test-mixed-bugs.R:4:3', 'test-mixed-bugs.R:17:3', 'test-mixed-structure.R:387:5', 'test-mixed-structure.R:434:3', 'test-mixed-structure.R:478:3', 'test-mixed-structure.R:536:3', 'test-mixed-structure.R:611:3', 'test-mixed-structure.R:641:3' • empty test (1): 'test-mixed-structure.R:142:1' [ FAIL 0 | WARN 0 | SKIP 29 | PASS 339 ] Deleting unused snapshots: • afex_plot-basics/afex-plot-connecting-individual-points-works.svg • afex_plot-basics/geoms-work-box-plot.svg • afex_plot-basics/geoms-work-geom-count.svg • afex_plot-basics/geoms-work-ggbeeswarm-geom-beeswarm.svg • afex_plot-basics/geoms-work-ggbeeswarm-geom-quasirandom.svg • afex_plot-basics/geoms-work-jitterdodge.svg • afex_plot-basics/geoms-work-violin-with-colour.svg • afex_plot-basics/geoms-work-violin.svg • afex_plot-basics/lme4-mermod-plot-2.svg • afex_plot-basics/lme4-mermod-plot-3.svg • afex_plot-basics/mixed-model-1.svg • afex_plot-basics/mixed-model-2.svg • afex_plot-basics/mixed-model-3.svg • afex_plot-basics/mixed-model-4.svg • afex_plot-basics/multiple-geoms-work-1.svg • afex_plot-basics/multiple-geoms-work-2.svg • afex_plot-basics/one-way-within.svg • afex_plot-basics/plot-first-for-afex-plot-works-1.svg • afex_plot-basics/plot-first-for-afex-plot-works-2.svg • afex_plot-basics/plot-first-for-afex-plot-works-3.svg • afex_plot-basics/plot-first-for-afex-plot-works-4.svg • afex_plot-basics/two-way.svg • afex_plot-basics/x-trace-panel.svg • afex_plot-bugs/afex-plot-binomial-glm-with-factor-2.svg • afex_plot-bugs/afex-plot-dv-y-works.svg • afex_plot-bugs/afex-plot-lmm-type-2.svg • afex_plot-bugs/afex-plot-mermod-objects-with-missing-data.svg • afex_plot-default-support/afex-plots-binomial-glm-1.svg • afex_plot-default-support/afex-plots-binomial-glm-2.svg • afex_plot-default-support/afex-plots-lm-model-2.svg • afex_plot-default-support/afex-plots-nlme-2.svg • afex_plot-default-support/afex-plots-nlme-3.svg • afex_plot-default-support/afex-plots-nlme-4.svg • afex_plot-default-support/afex-plots-nlme-5.svg • afex_plot-default-support/afex-plots-poisson-glm-1.svg • afex_plot-default-support/afex-plots-poisson-glm-2.svg • afex_plot-vignette/afex-plot-glmmtmb-1.svg • afex_plot-vignette/afex-plot-glmmtmb-2.svg • afex_plot-vignette/afex-plot-glmmtmb-3.svg > > proc.time() user system elapsed 48.31 2.20 50.54