R Under development (unstable) (2024-02-24 r85984 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(afex) Loading required package: lme4 Loading required package: Matrix ************ Welcome to afex. For support visit: http://afex.singmann.science/ - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4() - Methods for calculating p-values with mixed(): 'S', 'KR', 'LRT', and 'PB' - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests - Get and set global package options with: afex_options() - Set sum-to-zero contrasts globally: set_sum_contrasts() - For example analyses see: browseVignettes("afex") ************ Attaching package: 'afex' The following object is masked from 'package:lme4': lmer > > test_check("afex") Mixed Model Anova Table (Type 3 tests, S-method) Model: value ~ treatment + (1 | id) Data: obk.long Effect df F p.value 1 treatment 2, 13.00 2.91 + .090 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 Mixed Model Anova Table (Type 3 tests, S-method) Model: value ~ treatment + phase + (1 | id) Data: obk.long Effect df F p.value 1 treatment 2, 13.00 2.91 + .090 2 phase 2, 222.00 38.48 *** <.001 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 Mixed Model Anova Table (Type 3 tests, LRT-method) Model: value ~ treatment + (1 | id) Data: obk.long Df full model: 5 Effect df Chisq p.value 1 treatment 2 5.93 + .052 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 Mixed Model Anova Table (Type 3 tests, LRT-method) Model: value ~ treatment + phase + (1 | id) Data: obk.long Df full model: 7 Effect df Chisq p.value 1 treatment 2 5.93 + .052 2 phase 2 66.67 *** <.001 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 Mixed Model Anova Table (Type 3 tests, PB-method) Model: use ~ urban + (1 | district) Data: Contraception Effect df Chisq p.value 1 urban 1 31.28 .333 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 Mixed Model Anova Table (Type 3 tests, PB-method) Model: use ~ urban + livch + (1 | district) Data: Contraception Effect df Chisq p.value 1 urban 1 36.33 .333 2 livch 3 77.91 .333 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1 [ FAIL 0 | WARN 1 | SKIP 28 | PASS 341 ] ══ Skipped tests (28) ══════════════════════════════════════════════════════════ • On CRAN (27): 'test-afex_plot-basics.R:11:3', 'test-afex_plot-basics.R:76:3', 'test-afex_plot-basics.R:111:3', 'test-afex_plot-basics.R:140:3', 'test-afex_plot-basics.R:346:3', 'test-afex_plot-bugs.R:6:3', 'test-afex_plot-bugs.R:21:3', 'test-afex_plot-bugs.R:43:3', 'test-afex_plot-bugs.R:79:3', 'test-afex_plot-default-support.R:11:3', 'test-afex_plot-default-support.R:20:3', 'test-afex_plot-default-support.R:38:3', 'test-afex_plot-default-support.R:66:3', 'test-afex_plot-vignette.R:4:3', 'test-afex_plot-vignette.R:38:3', 'test-afex_plot-vignette.R:114:3', 'test-aov_car-bugs.R:253:3', 'test-emmeans-interface.R:144:3', 'test-emmeans-interface.R:209:3', 'test-mixed-bugs.R:6:3', 'test-mixed-bugs.R:19:3', 'test-mixed-structure.R:214:5', 'test-mixed-structure.R:242:3', 'test-mixed-structure.R:264:3', 'test-mixed-structure.R:305:3', 'test-mixed-structure.R:349:3', 'test-mixed-structure.R:369:3' • empty test (1): 'test-mixed-structure.R:86:1' [ FAIL 0 | WARN 1 | SKIP 28 | PASS 341 ] Deleting unused snapshots: • afex_plot-basics/afex-plot-connecting-individual-points-works.svg • afex_plot-basics/geoms-work-box-plot.svg • afex_plot-basics/geoms-work-boxjitter-1.svg • afex_plot-basics/geoms-work-boxjitter-2.svg • afex_plot-basics/geoms-work-boxjitter-3.svg • afex_plot-basics/geoms-work-geom-count.svg • afex_plot-basics/geoms-work-ggbeeswarm-geom-beeswarm.svg • afex_plot-basics/geoms-work-ggbeeswarm-geom-quasirandom.svg • afex_plot-basics/geoms-work-jitterdodge.svg • afex_plot-basics/geoms-work-violin-with-colour.svg • afex_plot-basics/geoms-work-violin.svg • afex_plot-basics/lme4-mermod-plot-2.svg • afex_plot-basics/lme4-mermod-plot-3.svg • afex_plot-basics/mixed-model-1.svg • afex_plot-basics/mixed-model-2.svg • afex_plot-basics/mixed-model-3.svg • afex_plot-basics/mixed-model-4.svg • afex_plot-basics/multiple-geoms-work-1.svg • afex_plot-basics/multiple-geoms-work-2.svg • afex_plot-basics/one-way-within.svg • afex_plot-basics/two-way.svg • afex_plot-basics/x-trace-panel.svg • afex_plot-bugs/afex-plot-binomial-glm-with-factor-2.svg • afex_plot-bugs/afex-plot-dv-y-works.svg • afex_plot-bugs/afex-plot-lmm-type-2.svg • afex_plot-bugs/afex-plot-mermod-objects-with-missing-data.svg • afex_plot-default-support/afex-plots-binomial-glm-1.svg • afex_plot-default-support/afex-plots-binomial-glm-2.svg • afex_plot-default-support/afex-plots-lm-model-2.svg • afex_plot-default-support/afex-plots-nlme-2.svg • afex_plot-default-support/afex-plots-nlme-3.svg • afex_plot-default-support/afex-plots-nlme-4.svg • afex_plot-default-support/afex-plots-nlme-5.svg • afex_plot-default-support/afex-plots-poisson-glm-1.svg • afex_plot-default-support/afex-plots-poisson-glm-2.svg • afex_plot-vignette/afex-plot-glmmtmb-1.svg • afex_plot-vignette/afex-plot-glmmtmb-2.svg • afex_plot-vignette/afex-plot-glmmtmb-3.svg > > proc.time() user system elapsed 58.39 1.29 59.68