* using log directory ‘/srv/hornik/tmp/CRAN/adoptr.Rcheck’ * using R Under development (unstable) (2024-01-29 r85841) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘adoptr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘adoptr’ version ‘1.0.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/7s] NOTE Maintainer: ‘Kevin Kunzmann ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: pre (18:24) CRAN repository db overrides: X-CRAN-Comment: Archived on 2023-08-19 as email to the maintainer is undeliverable. Found the following (possibly) invalid URLs: URL: https://codecov.io/gh/kkmann/adoptr?branch=master (moved to https://app.codecov.io/gh/kkmann/adoptr?branch=master) From: README.md Status: 301 Message: Moved Permanently URL: https://www.ema.europa.eu/en/methodological-issues-confirmatory-clinical-trials-planned-adaptive-design (moved to https://www.ema.europa.eu/en/methodological-issues-confirmatory-clinical-trials-planned-adaptive-design-scientific-guideline) From: inst/doc/adoptr_jss.html Status: 301 Message: Moved Permanently URL: https://www.iconplc.com/innovation/addplan/ From: inst/doc/adoptr_jss.html Status: 404 Message: Not Found For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘adoptr’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate-TwoStageDesign-numeric-method.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [2s/2s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [13s/13s] OK Running ‘testthat.R’ [12s/12s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [16s/16s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs