R Under development (unstable) (2025-11-21 r89046 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(admixr) ADMIXTOOLS programs required by admixr are not in your $PATH variable. At the very least, the following programs should be available: qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave, qpfstats, mergeit One way to solve this is to modify the $PATH variable in your ~/.Renviron file so that it points to the directory containing the ADMIXTOOLS programs. Current contents of the $PATH: d:/rtools45/usr/bin;d:/rtools45/x86_64-w64-mingw32.static.posix/bin;d:/rtools45/usr/bin;d:/rtools45/x86_64-w64-mingw32.static.posix/bin;d:/rtools45/usr/bin;d:/rtools45/x86_64-w64-mingw32.static.posix/bin;d:/rtools45/usr/bin;d:/rtools45/x86_64-w64-mingw32.static.posix/bin;D:\RCompile\recent\R\bin/x64;d:/rtools45/usr/bin;d:/rtools45/x86_64-w64-mingw32.static.posix/bin;d:/rtools45/usr/bin;d:/rtools45/x86_64-w64-mingw32.static.posix/bin;D:\rtools45\usr\bin;D:\rtools45\x86_64-w64-mingw32.static.posix\bin;D:\rtools45\usr\bin;D:\rtools45\x86_64-w64-mingw32.static.posix\bin;.;D:\rtools45\usr\bin;D:\rtools45\x86_64-w64-mingw32.static.posix\bin;C:\Program Files\MiKTeX\miktex\bin\x64;C:\Program Files\gs\gs\bin;D:\compiler\qpdf\bin;D:\RCompile\CRANpkg\extralibs\localsolver_4_0\bin;D:\RCompile\CRANpkg\extralibs\MARK;C:\Program Files\7-Zip;D:\Compiler\gretl;C:\Program Files\Quarto\bin;D:\compiler\Ruby\bin;C:\Program Files\Microsoft MPI\Bin;C:\Program Files\Python\Scripts;C:\Program Files\Python;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0;C:\Windows\System32\OpenSSH;C:\Program Files\PuTTY;C:\Program Files (x86)\WinSCP;C:\Program Files\Pandoc;C:\Program Files\MiKTeX\miktex\bin\x64;C:\Program Files (x86)\Windows Kits\10\Windows Performance Toolkit;C:\Program Files\gs\gs\bin;C:\Program Files\jdk-11.0.18.10-hotspot\bin;D:\compiler\perl\c\bin;D:\compiler\perl\perl\site\bin;D:\compiler\perl\perl\bin;C:\Users\CRAN\.cargo\bin;C:\Users\CRAN\AppData\Local\Microsoft\WindowsApps;D:\rtools45\usr\bin;C:\Program Files\Julia\bin;C:\Users\CRAN\.cargo\bin;D:\compiler\LDC\bin;D:\RCompile\recent\R\bin\x64\// > > test_check("admixr") [ FAIL 0 | WARN 0 | SKIP 41 | PASS 3 ] ══ Skipped tests (41) ══════════════════════════════════════════════════════════ • On CRAN (41): 'test-admixtools_cmds.R:10:3', 'test-admixtools_cmds.R:20:3', 'test-admixtools_cmds.R:30:3', 'test-admixtools_cmds.R:40:3', 'test-admixtools_cmds.R:50:3', 'test-filtering.R:2:3', 'test-filtering.R:34:3', 'test-filtering.R:46:3', 'test-filtering.R:64:3', 'test-filtering.R:90:3', 'test-filtering.R:105:3', 'test-filtering.R:122:3', 'test-io.R:9:3', 'test-io.R:25:3', 'test-io.R:41:3', 'test-log.R:8:3', 'test-log.R:31:3', 'test-log.R:49:3', 'test-log.R:67:3', 'test-qpAdm.R:11:5', 'test-qpAdm.R:28:5', 'test-qpAdm.R:45:5', 'test-qpAdm.R:62:5', 'test-qpAdm.R:88:3', 'test-utils.R:17:3', 'test-utils.R:28:3', 'test-utils.R:40:3', 'test-utils.R:77:3', 'test-utils.R:103:3', 'test-utils.R:122:3', 'test-wrappers.R:15:3', 'test-wrappers.R:29:3', 'test-wrappers.R:43:3', 'test-wrappers.R:61:3', 'test-wrappers.R:88:3', 'test-wrappers.R:101:3', 'test-wrappers.R:115:3', 'test-wrappers.R:131:3', 'test-wrappers.R:142:3', 'test-wrappers.R:153:3', 'test-wrappers.R:167:3' [ FAIL 0 | WARN 0 | SKIP 41 | PASS 3 ] > > proc.time() user system elapsed 1.32 0.23 1.54