* using log directory ‘/srv/hornik/tmp/CRAN_pretest/admixr2.Rcheck’
* using R Under development (unstable) (2026-05-10 r90034)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (3+b1)
    Debian flang version 21.1.8 (3+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-05-11 14:24:31 UTC
* checking for file ‘admixr2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘admixr2’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘H. van de Beek <h.van.de.beek@lacdr.leidenuniv.nl>’

New submission

Possibly misspelled words in DESCRIPTION:
  IRMC (14:62)
  backends (13:58)
  nlmixr (13:14)
  pharmacometric (11:18)
  rxode (13:22)

Found the following (possibly) invalid URLs:
  URL: https://codecov.io/gh/LeidenPharmacology/admixr2 (moved to https://app.codecov.io/gh/LeidenPharmacology/admixr2)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://leidenpharmacology.github.io/admixr2 (moved to https://leidenpharmacology.github.io/admixr2/)
    From: DESCRIPTION
    Status: 301
    Message: Moved Permanently
  URL: https://rxode2.nlmixr2.org/
    From: README.md
    Status: Error
    Message: Could not resolve hostname [rxode2.nlmixr2.org]:
      Could not resolve host: rxode2.nlmixr2.org
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

Found the following (possibly) invalid file URIs:
  URI: advanced.html
    From: inst/doc/admixr2.html
  URI: articles/admixr2.html
    From: README.md
  URI: articles/diagnostic-plots.html
    From: README.md
  URI: articles/multiple-studies.html
    From: README.md
  URI: articles/estimator-comparison.html
    From: README.md
  URI: articles/advanced.html
    From: README.md
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘admixr2’ can be installed ... [24s/25s] OK
* used C++ compiler: ‘Debian clang version 21.1.8 (3+b1)’
* checking C++ specification ... INFO
  specified C++17
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [6s/6s] OK
  Running ‘testthat.R’ [6s/6s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [57s/58s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE