adsl <- tibble::tribble( ~USUBJID, ~SEX, ~COUNTRY, "ST42-1", "F", "AUT", "ST42-2", "M", "MWI", "ST42-3", "M", "NOR", "ST42-4", "F", "UGA" ) %>% mutate(STUDYID = "ST42") adsl1 <- tibble::tribble( ~ID, ~SEX, ~COUNTRY, "ST42-1", "F", "AUT", "ST42-2", "M", "MWI", "ST42-3", "M", "NOR", "ST42-4", "F", "UGA" ) %>% mutate(STUDYID = "ST42") adsl2 <- tibble::tribble( ~ID, ~SEX, ~COUNTRY, "ST42-1", "F", "AUT", "ST42-1", "F", "NOR", "ST42-2", "M", "MWI", "ST42-3", "M", "NOR", "ST42-4", "F", "UGA" ) %>% mutate(STUDYID = "ST42") advs <- tibble::tribble( ~USUBJID, ~PARAMCD, ~AVISIT, ~AVAL, "ST42-1", "WEIGHT", "BASELINE", 66, "ST42-1", "WEIGHT", "Week 2", 68, "ST42-2", "WEIGHT", "BASELINE", 88, "ST42-3", "WEIGHT", "Week 2", 55, "ST42-3", "WEIGHT", "Week 4", 50 ) %>% mutate(STUDYID = "ST42") advs1 <- tibble::tribble( ~ID, ~PARAMCD, ~AVISIT, ~AVAL, "ST42-1", "WEIGHT", "BASELINE", 66, "ST42-1", "WEIGHT", "Week 2", 68, "ST42-2", "WEIGHT", "BASELINE", 88, "ST42-3", "WEIGHT", "Week 2", 55, "ST42-3", "WEIGHT", "Week 4", 50 ) %>% mutate(STUDYID = "ST42") ex <- tibble::tribble( ~USUBJID, ~EXSTDTC, "ST42-1", "2020-12-07", "ST42-1", "2020-12-14", "ST42-2", "2021-01-12T12:00:00", "ST42-2", "2021-01-26T13:21", "ST42-3", "2021-03-02" ) %>% mutate(STUDYID = "ST42") vs <- tibble::tribble( ~USUBJID, ~VSTESTCD, ~VSTEST, ~VSORRES, ~VSSEQ, "ST42-1", "DIABP", "Diastolic Blood Pressure", 64, 1, "ST42-1", "DIABP", "Diastolic Blood Pressure", 83, 2, "ST42-1", "WEIGHT", "Weight", 120, 3, "ST42-2", "WEIGHT", "Weight", 110, 1, "ST42-2", "HEIGHT", "Height", 58, 2 ) %>% mutate(STUDYID = "ST42") # derive_vars_merged ---- ## Test 1: merge all variables ---- test_that("derive_vars_merged Test 1: merge all variables", { actual <- derive_vars_merged(advs, dataset_add = adsl, by_vars = exprs(STUDYID, USUBJID) ) expected <- left_join(advs, adsl, by = c("STUDYID", "USUBJID")) expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID", "AVISIT") ) }) ## Test 2: merge selected variables ---- test_that("derive_vars_merged Test 2: merge selected variables", { actual <- derive_vars_merged(advs, dataset_add = adsl, by_vars = exprs(USUBJID), new_vars = exprs(SEX) ) expected <- left_join(advs, select(adsl, USUBJID, SEX), by = "USUBJID") expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID", "AVISIT") ) }) ## Test 3: merge last value and flag matched by groups ---- test_that("derive_vars_merged Test 3: merge last value and flag matched by groups", { actual <- derive_vars_merged(adsl, dataset_add = advs, order = exprs(AVAL), by_vars = exprs(STUDYID, USUBJID), new_vars = exprs(WEIGHTBL = AVAL), mode = "last", exist_flag = matched ) expected <- adsl %>% mutate( WEIGHTBL = c(68, 88, 55, NA), matched = c("Y", "Y", "Y", NA_character_) ) expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID") ) }) ## Test 4: merge last value and flag matched by groups ---- test_that("derive_vars_merged Test 4: merge last value and flag matched by groups", { actual <- derive_vars_merged(adsl, dataset_add = advs, order = exprs(AVAL), by_vars = exprs(STUDYID, USUBJID), new_vars = exprs(WEIGHTBL = AVAL), mode = "last", exist_flag = matched, true_value = "Y", false_value = "N" ) expected <- adsl %>% mutate( WEIGHTBL = c(68, 88, 55, NA), matched = c("Y", "Y", "Y", "N") ) expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID") ) }) ## Test 5: error if variable in both datasets ---- test_that("derive_vars_merged Test 5: error if variable in both datasets", { expect_snapshot( derive_vars_merged(advs, dataset_add = adsl, by_vars = exprs(USUBJID) ), error = TRUE ) }) ## Test 6: by_vars with rename ---- test_that("derive_vars_merged Test 6: by_vars with rename", { actual <- derive_vars_merged(advs, dataset_add = adsl1, by_vars = exprs(STUDYID, USUBJID = ID), filter_add = SEX == "F" ) adsl_1 <- adsl1 %>% filter(SEX == "F") expected <- left_join(advs, adsl_1, by = c("STUDYID", "USUBJID" = "ID")) expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID", "AVISIT") ) }) ## Test 7: expressions for new_vars and missing_values ---- test_that("derive_vars_merged Test 7: expressions for new_vars and missing_values", { actual <- derive_vars_merged( adsl, dataset_add = advs, by_vars = exprs(USUBJID), order = exprs(AVISIT), new_vars = exprs(LASTVIS = str_to_upper(AVISIT)), mode = "last", missing_values = exprs(LASTVIS = "UNKNOWN") ) expected <- mutate(adsl, LASTVIS = c("WEEK 2", "BASELINE", "WEEK 4", "UNKNOWN")) expect_dfs_equal( base = expected, compare = actual, keys = "USUBJID" ) }) ## Test 8: Use of missing_values and exist_flags ---- test_that("derive_vars_merged Test 8: Use of missing_values and exist_flags", { actual <- derive_vars_merged( adsl, dataset_add = advs, by_vars = exprs(USUBJID), order = exprs(AVISIT), new_vars = exprs(LASTVIS = str_to_upper(AVISIT)), mode = "last", missing_values = exprs(LASTVIS = "UNKNOWN"), exist_flag = matched, true_value = NA, false_value = "No" ) expected <- adsl %>% mutate( LASTVIS = c("WEEK 2", "BASELINE", "WEEK 4", "UNKNOWN"), matched = c(NA, NA, NA, "No") ) expect_dfs_equal( base = expected, compare = actual, keys = "USUBJID" ) }) ## Test 9: use new variables in filter_add and order ---- test_that("derive_vars_merged Test 9: use new variables in filter_add and order", { expected <- tibble::tribble( ~USUBJID, ~TRTSDT, ~TRTSSEQ, "ST42-1", "2020-12-14", 2, "ST42-2", "2021-01-26", 2, "ST42-3", NA, NA, "ST42-4", NA, NA ) %>% mutate( STUDYID = "ST42", TRTSDT = ymd(TRTSDT) ) ex <- tibble::tribble( ~USUBJID, ~EXSTDTC, ~EXSEQ, "ST42-1", "2020-12-07", 1, "ST42-1", "2020-12-14", 2, "ST42-2", "2021-01-12T12:00:00", 1, "ST42-2", "2021-01-26T13:21", 2, "ST42-3", "2021-03", 1 ) %>% mutate(STUDYID = "ST42") actual <- derive_vars_merged( select(adsl, STUDYID, USUBJID), dataset_add = ex, by_vars = exprs(USUBJID), order = exprs(TRTSDT), new_vars = exprs(TRTSDT = convert_dtc_to_dt(EXSTDTC), TRTSSEQ = EXSEQ), filter_add = !is.na(TRTSDT), mode = "last" ) expect_dfs_equal( base = expected, compare = actual, keys = "USUBJID" ) }) ## Test 10: warning if not unique w.r.t the by variables and the order ---- test_that("derive_vars_merged Test 10: warning if not unique w.r.t the by variables and the order", { # nolint expect_warning( actual <- derive_vars_merged(advs, dataset_add = adsl2, by_vars = exprs(STUDYID, USUBJID = ID), order = exprs(ID), mode = "last", check_type = "warning" ), regexp = "" ) }) ## Test 11: error if not unique w.r.t the by variables and the order ---- test_that("derive_vars_merged Test 11: error if not unique w.r.t the by variables and the order", { expect_snapshot( actual <- derive_vars_merged(advs, dataset_add = adsl2, by_vars = exprs(STUDYID, USUBJID = ID), order = exprs(ID), mode = "last", check_type = "error", duplicate_msg = "Duplicate records present!" ), error = TRUE ) }) ## Test 12: error if variables in missing_values but not in new_vars ---- test_that("derive_vars_merged Test 12: error if variables in missing_values but not in new_vars", { expect_snapshot( derive_vars_merged( adsl, dataset_add = advs, by_vars = exprs(USUBJID), order = exprs(AVISIT), new_vars = exprs(LASTVIS = str_to_upper(AVISIT)), mode = "last", missing_values = exprs(LASTVIS = "UNKNOWN", LASTVISN = -1) ), error = TRUE ) }) ## Test 13: error if not unique, no order, check_type = error ---- test_that("derive_vars_merged Test 13: error if not unique, no order, check_type = error", { expect_snapshot( actual <- derive_vars_merged(advs, dataset_add = adsl2, by_vars = exprs(STUDYID, USUBJID = ID), order = NULL, check_type = "error" ), error = TRUE ) }) ## Test 14: error if not unique, no order, check_type = warning ---- test_that("derive_vars_merged Test 14: error if not unique, no order, check_type = warning", { expect_snapshot( actual <- derive_vars_merged( advs, dataset_add = adsl2, by_vars = exprs(STUDYID, USUBJID = ID), order = NULL, check_type = "warning" ), error = TRUE ) }) ## Test 15: error if not unique, no order, check_type = NULL ---- test_that("derive_vars_merged Test 15: error if not unique, no order, check_type = NULL", { expect_snapshot( actual <- derive_vars_merged( advs, dataset_add = adsl2, by_vars = exprs(STUDYID, USUBJID = ID), order = NULL, check_type = NULL ), error = TRUE ) }) ## Test 16: merge relationship as 'many-to-one' ---- test_that("derive_vars_merged Test 16: merge relationship as 'many-to-one'", { actual <- derive_vars_merged(advs, dataset_add = adsl, by_vars = exprs(USUBJID), new_vars = exprs(SEX), relationship = "many-to-one" ) expected <- left_join(advs, select(adsl, USUBJID, SEX), by = "USUBJID") expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID", "AVISIT") ) }) ## Test 17: error incorrect 'one-to-one' ---- test_that("derive_vars_merged Test 17: error incorrect 'one-to-one'", { expect_snapshot( derive_vars_merged(advs, dataset_add = adsl, by_vars = exprs(USUBJID), new_vars = exprs(SEX), relationship = "one-to-one" ), error = TRUE ) }) ## Test 18: merge sel vars 'one-to-one' ---- test_that("derive_vars_merged Test 18: merge sel vars 'one-to-one'", { expect_snapshot( derive_vars_merged(adsl, dataset_add = advs, by_vars = exprs(USUBJID), new_vars = exprs(WEIGHTBL = AVAL), filter_add = AVISIT == "BASELINE", relationship = "one-to-one" ) ) }) # derive_var_merged_exist_flag ---- ## Test 19: merge existence flag ---- test_that("derive_var_merged_exist_flag Test 19: merge existence flag", { actual <- derive_var_merged_exist_flag( adsl, advs, by_vars = exprs(USUBJID), new_var = VSEVALFL, condition = AVISIT == "BASELINE" ) expected <- mutate(adsl, VSEVALFL = c("Y", "Y", NA_character_, NA_character_)) expect_dfs_equal( base = expected, compare = actual, keys = "USUBJID" ) }) ## Test 20: by_vars with rename ---- test_that("derive_var_merged_exist_flag Test 20: by_vars with rename", { actual <- derive_var_merged_exist_flag( adsl, dataset_add = advs1, by_vars = exprs(USUBJID = ID), new_var = VSEVALFL, condition = AVISIT == "BASELINE" ) expected <- mutate(adsl, VSEVALFL = c("Y", "Y", NA_character_, NA_character_)) expect_dfs_equal( base = expected, compare = actual, keys = "USUBJID" ) }) # derive_vars_merged_lookup ---- ## Test 21: merge lookup table ---- test_that("derive_vars_merged_lookup Test 21: merge lookup table", { param_lookup <- tibble::tribble( ~VSTESTCD, ~VSTEST, ~PARAMCD, ~DESCRIPTION, "WEIGHT", "Weight", "WEIGHT", "Weight (kg)", "HEIGHT", "Height", "HEIGHT", "Height (cm)", "BMI", "Body Mass Index", "BMI", "Body Mass Index(kg/m^2)" ) attr(param_lookup$VSTESTCD, "label") <- "Vital Signs Test Short Name" attr(param_lookup$VSTEST, "label") <- "Vital Signs Test Name" expect_snapshot( actual <- derive_vars_merged_lookup( vs, dataset_add = param_lookup, by_vars = exprs(VSTESTCD, VSTEST), new_var = exprs(PARAMCD, PARAM = DESCRIPTION), print_not_mapped = TRUE ) ) expected <- left_join(vs, param_lookup, by = c("VSTESTCD", "VSTEST")) %>% rename(PARAM = DESCRIPTION) expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID", "VSSEQ", "VSTESTCD") ) }) ## the lookup table ## Test 22: all by_vars have records in the lookup table ---- test_that("derive_vars_merged_lookup Test 22: all by_vars have records in the lookup table", { param_lookup <- tibble::tribble( ~VSTESTCD, ~VSTEST, ~PARAMCD, ~DESCRIPTION, "WEIGHT", "Weight", "WEIGHT", "Weight (kg)", "HEIGHT", "Height", "HEIGHT", "Height (cm)", "BMI", "Body Mass Index", "BMI", "Body Mass Index(kg/m^2)", "DIABP", "Diastolic Blood Pressure", "DIABP", "Diastolic Blood Pressure (mmHg)" ) attr(param_lookup$VSTESTCD, "label") <- "Vital Signs Test Short Name" attr(param_lookup$VSTEST, "label") <- "Vital Signs Test Name" expect_message( actual <- derive_vars_merged_lookup( vs, dataset_add = param_lookup, by_vars = exprs(VSTESTCD, VSTEST), new_var = exprs(PARAMCD, PARAM = DESCRIPTION), print_not_mapped = TRUE ), regex = "All `VSTESTCD` and `VSTEST` are mapped." ) expected <- left_join(vs, param_lookup, by = c("VSTESTCD", "VSTEST")) %>% rename(PARAM = DESCRIPTION) expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID", "VSSEQ", "VSTESTCD") ) }) ## Test 23: by_vars with rename ---- test_that("derive_vars_merged_lookup Test 23: by_vars with rename", { param_lookup <- tibble::tribble( ~TESTCD, ~VSTEST, ~PARAMCD, ~DESCRIPTION, "WEIGHT", "Weight", "WEIGHT", "Weight (kg)", "HEIGHT", "Height", "HEIGHT", "Height (cm)", "BMI", "Body Mass Index", "BMI", "Body Mass Index(kg/m^2)" ) attr(param_lookup$TESTCD, "label") <- "Vital Signs Test Short Name" attr(param_lookup$VSTEST, "label") <- "Vital Signs Test Name" expect_snapshot( actual <- derive_vars_merged_lookup( vs, dataset_add = param_lookup, by_vars = exprs(VSTESTCD = TESTCD, VSTEST), new_var = exprs(PARAMCD, PARAM = DESCRIPTION), print_not_mapped = TRUE ) ) expected <- left_join(vs, param_lookup, by = c("VSTESTCD" = "TESTCD", "VSTEST")) %>% rename(PARAM = DESCRIPTION) expect_dfs_equal( base = expected, compare = actual, keys = c("USUBJID", "VSSEQ", "VSTESTCD") ) }) # get_not_mapped ---- ## Test 24: not all by_vars have records in the lookup table ---- test_that("get_not_mapped Test 24: not all by_vars have records in the lookup table", { param_lookup <- tibble::tribble( ~VSTESTCD, ~VSTEST, ~PARAMCD, ~DESCRIPTION, "WEIGHT", "Weight", "WEIGHT", "Weight (kg)", "HEIGHT", "Height", "HEIGHT", "Height (cm)", "BMI", "Body Mass Index", "BMI", "Body Mass Index(kg/m^2)" ) attr(param_lookup$VSTESTCD, "label") <- "Vital Signs Test Short Name" attr(param_lookup$VSTEST, "label") <- "Vital Signs Test Name" expect_snapshot( act_vs_param <- derive_vars_merged_lookup( vs, dataset_add = param_lookup, by_vars = exprs(VSTESTCD, VSTEST), new_var = exprs(PARAMCD, PARAM = DESCRIPTION), print_not_mapped = TRUE ) ) actual <- get_not_mapped() expected <- left_join(vs, param_lookup, by = c("VSTESTCD", "VSTEST")) %>% rename(PARAM = DESCRIPTION) %>% filter(is.na(PARAMCD)) %>% select(VSTESTCD, VSTEST) %>% distinct() expect_dfs_equal( base = expected, compare = actual, keys = c("VSTESTCD", "VSTEST") ) }) # derive_vars_merged_summary ---- ## Test 25: dataset == dataset_add, no filter ---- test_that("derive_vars_merged_summary Test 25: dataset == dataset_add, no filter", { expected <- tibble::tribble( ~AVISIT, ~ASEQ, ~AVAL, ~MEANVIS, "WEEK 1", 1, 10, 10, "WEEK 1", 2, NA, 10, "WEEK 2", 3, NA, NA, "WEEK 3", 4, 42, 42, "WEEK 4", 5, 12, 13, "WEEK 4", 6, 12, 13, "WEEK 4", 7, 15, 13 ) adbds <- select(expected, -MEANVIS) expect_dfs_equal( base = expected, compare = derive_vars_merged_summary( adbds, dataset_add = adbds, by_vars = exprs(AVISIT), new_vars = exprs(MEANVIS = mean(AVAL, na.rm = TRUE)) ), keys = c("AVISIT", "ASEQ") ) }) ## Test 26: dataset != dataset_add, filter ---- test_that("derive_vars_merged_summary Test 26: dataset != dataset_add, filter", { expected <- tibble::tribble( ~USUBJID, ~MEANPBL, "1", 13.5, "2", NA, "3", 42.0 ) adbds <- tibble::tribble( ~USUBJID, ~ADY, ~AVAL, "1", -3, 10, "1", 2, 12, "1", 8, 15, "3", 4, 42 ) adsl <- select(expected, -MEANPBL) expect_dfs_equal( base = expected, compare = derive_vars_merged_summary( adsl, dataset_add = adbds, by_vars = exprs(USUBJID), new_vars = exprs(MEANPBL = mean(AVAL, na.rm = TRUE)), filter_add = ADY > 0 ), keys = c("USUBJID") ) }) ## Test 27: by_vars with rename ---- test_that("derive_vars_merged_summary Test 27: by_vars with rename", { expected <- tibble::tribble( ~AVISIT, ~ASEQ, ~AVAL, ~MEANVIS, "WEEK 1", 1, 10, 10, "WEEK 1", 2, NA, 10, "WEEK 2", 3, NA, NA, "WEEK 3", 4, 42, 42, "WEEK 4", 5, 12, 13, "WEEK 4", 6, 12, 13, "WEEK 4", 7, 15, 13 ) adbds <- select(expected, -MEANVIS) adbds1 <- select(expected, -MEANVIS) %>% rename(VISIT = AVISIT) expect_dfs_equal( base = expected, compare = derive_vars_merged_summary( adbds, dataset_add = adbds1, by_vars = exprs(AVISIT = VISIT), new_vars = exprs(MEANVIS = mean(AVAL, na.rm = TRUE)) ), keys = c("AVISIT", "ASEQ") ) }) ## Test 28: error if no summary function ---- test_that("derive_vars_merged_summary Test 28: error if no summary function", { adbds <- tibble::tribble( ~AVISIT, ~ASEQ, ~AVAL, "WEEK 1", 1, 10, "WEEK 1", 2, NA, "WEEK 2", 3, NA, "WEEK 3", 4, 42, "WEEK 4", 5, 12, "WEEK 4", 6, 12, "WEEK 4", 7, 15 ) expect_snapshot( derive_vars_merged_summary( adbds, dataset_add = adbds, by_vars = exprs(AVISIT), new_vars = exprs(MEANVIS = AVAL / 2) ), error = TRUE ) }) # derive_var_merged_summary ---- ## Test 29: dataset == dataset_add, no filter ---- test_that("derive_var_merged_summary Test 29: dataset == dataset_add, no filter", { withr::local_options(list(lifecycle_verbosity = "quiet")) expected <- tibble::tribble( ~AVISIT, ~ASEQ, ~AVAL, ~MEANVIS, "WEEK 1", 1, 10, 10, "WEEK 1", 2, NA, 10, "WEEK 2", 3, NA, NA, "WEEK 3", 4, 42, 42, "WEEK 4", 5, 12, 13, "WEEK 4", 6, 12, 13, "WEEK 4", 7, 15, 13 ) adbds <- select(expected, -MEANVIS) expect_dfs_equal( base = expected, compare = derive_var_merged_summary( adbds, dataset_add = adbds, by_vars = exprs(AVISIT), new_vars = exprs(MEANVIS = mean(AVAL, na.rm = TRUE)) ), keys = c("AVISIT", "ASEQ") ) }) ## Test 30: dataset != dataset_add, filter ---- test_that("derive_var_merged_summary Test 30: dataset != dataset_add, filter", { withr::local_options(list(lifecycle_verbosity = "quiet")) expected <- tibble::tribble( ~USUBJID, ~MEANPBL, "1", 13.5, "2", NA, "3", 42.0 ) adbds <- tibble::tribble( ~USUBJID, ~ADY, ~AVAL, "1", -3, 10, "1", 2, 12, "1", 8, 15, "3", 4, 42 ) adsl <- select(expected, -MEANPBL) expect_dfs_equal( base = expected, compare = derive_var_merged_summary( adsl, dataset_add = adbds, by_vars = exprs(USUBJID), new_vars = exprs(MEANPBL = mean(AVAL, na.rm = TRUE)), filter_add = ADY > 0 ), keys = c("USUBJID") ) }) ## Test 31: by_vars with rename ---- test_that("derive_var_merged_summary Test 31: by_vars with rename", { withr::local_options(list(lifecycle_verbosity = "quiet")) expected <- tibble::tribble( ~AVISIT, ~ASEQ, ~AVAL, ~MEANVIS, "WEEK 1", 1, 10, 10, "WEEK 1", 2, NA, 10, "WEEK 2", 3, NA, NA, "WEEK 3", 4, 42, 42, "WEEK 4", 5, 12, 13, "WEEK 4", 6, 12, 13, "WEEK 4", 7, 15, 13 ) adbds <- select(expected, -MEANVIS) adbds1 <- select(expected, -MEANVIS) %>% rename(VISIT = AVISIT) expect_dfs_equal( base = expected, compare = derive_var_merged_summary( adbds, dataset_add = adbds1, by_vars = exprs(AVISIT = VISIT), new_vars = exprs(MEANVIS = mean(AVAL, na.rm = TRUE)) ), keys = c("AVISIT", "ASEQ") ) }) ## Test 32: error if no summary function ---- test_that("derive_var_merged_summary Test 32: error if no summary function", { withr::local_options(list(lifecycle_verbosity = "quiet")) adbds <- tibble::tribble( ~AVISIT, ~ASEQ, ~AVAL, "WEEK 1", 1, 10, "WEEK 1", 2, NA, "WEEK 2", 3, NA, "WEEK 3", 4, 42, "WEEK 4", 5, 12, "WEEK 4", 6, 12, "WEEK 4", 7, 15 ) expect_snapshot( derive_var_merged_summary( adbds, dataset_add = adbds, by_vars = exprs(AVISIT), new_vars = exprs(MEANVIS = AVAL / 2) ), error = TRUE ) }) ## Test 33: deprecation message ---- test_that("derive_var_merged_summary Test 33: deprecation message", { expected <- tibble::tribble( ~AVISIT, ~ASEQ, ~AVAL, ~MEANVIS, "WEEK 1", 1, 10, 10, "WEEK 1", 2, NA, 10, "WEEK 2", 3, NA, NA, "WEEK 3", 4, 42, 42, "WEEK 4", 5, 12, 13, "WEEK 4", 6, 12, 13, "WEEK 4", 7, 15, 13 ) adbds <- select(expected, -MEANVIS) adbds1 <- select(expected, -MEANVIS) %>% rename(VISIT = AVISIT) expect_snapshot( derive_var_merged_summary( adbds, dataset_add = adbds1, by_vars = exprs(AVISIT = VISIT), new_vars = exprs(MEANVIS = mean(AVAL, na.rm = TRUE)) ) ) })