downloading reverse dependencies ... downloading ade4TkGUI_0.3.4.tar.gz ... ok downloading adespatial_0.3-27.tar.gz ... ok downloading adiv_2.2.1.tar.gz ... ok downloading treespace_1.1.4.3.tar.gz ... ok downloading ade4_1.7-23.tar.gz ... ok downloading Guerry_1.8.3.tar.gz ... ok installing dependencies ‘ade4TkGUI’, ‘adegraphics’, ‘adespatial’, ‘betapart’, ‘candisc’, ‘corrgram’, ‘distory’, ‘ggpcp’, ‘Guerry’, ‘RLumShiny’, ‘scatterD3’ also installing the dependencies ‘Luminescence’, ‘RCarb’ begin installing package ‘Luminescence’ begin installing package ‘RCarb’ begin installing package ‘Guerry’ begin installing package ‘betapart’ begin installing package ‘distory’ begin installing package ‘scatterD3’ begin installing package ‘corrgram’ begin installing package ‘ggpcp’ begin installing package ‘candisc’ begin installing package ‘adegraphics’ * installing *source* package ‘Guerry’ ... ** this is package ‘Guerry’ version ‘1.8.3’ ** package ‘Guerry’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** demo ** inst ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Guerry) * installing *source* package ‘corrgram’ ... ** this is package ‘corrgram’ version ‘1.14’ ** package ‘corrgram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (corrgram) * installing *source* package ‘RCarb’ ... ** this is package ‘RCarb’ version ‘0.1.6’ ** package ‘RCarb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCarb) * installing *source* package ‘scatterD3’ ... ** this is package ‘scatterD3’ version ‘1.0.1’ ** package ‘scatterD3’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scatterD3) * installing *source* package ‘ggpcp’ ... ** this is package ‘ggpcp’ version ‘0.2.0’ ** package ‘ggpcp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggpcp) * installing *source* package ‘candisc’ ... ** this is package ‘candisc’ version ‘0.9.0’ ** package ‘candisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (candisc) * installing *source* package ‘betapart’ ... ** this is package ‘betapart’ version ‘1.6’ ** package ‘betapart’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (betapart) * installing *source* package ‘distory’ ... ** this is package ‘distory’ version ‘1.4.5’ ** package ‘distory’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmphx8xZS/R.INSTALL3ad88430dd0c46/distory/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distory.c -o distory.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newick.cpp -o newick.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phydist_r.cpp -o phydist_r.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c treedist-stripped.cpp -o treedist-stripped.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o distory.so distory.o newick.o phydist_r.o treedist-stripped.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmphx8xZS/R.INSTALL3ad88430dd0c46/distory/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-distory/00new/distory/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distory) * installing *source* package ‘adegraphics’ ... ** this is package ‘adegraphics’ version ‘1.0-22’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adegraphics) begin installing package ‘ade4TkGUI’ begin installing package ‘adespatial’ * installing *source* package ‘ade4TkGUI’ ... ** this is package ‘ade4TkGUI’ version ‘0.3.4’ ** package ‘ade4TkGUI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ade4TkGUI) * installing *source* package ‘adespatial’ ... ** this is package ‘adespatial’ version ‘0.3-27’ ** package ‘adespatial’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcL0DP6/R.INSTALL3adb214d8cca1f/adespatial/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c WRperiodogram.c -o WRperiodogram.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adesub.c -o adesub.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c betadiv.c -o betadiv.o betadiv.c: In function ‘euclidean’: betadiv.c:36:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 36 | for (i = 0; i < I; i++) | ^~~ In file included from betadiv.c:7: /home/hornik/tmp/R-d-gcc-14/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:42:9: note: in expansion of macro ‘UNPROTECT’ 42 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘manhattan’: betadiv.c:476:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 476 | for (i=0; i= 3.0.2) Imports: ade4 (>= 1.7-13), graphics, grid, KernSmooth, lattice, latticeExtra, methods, RColorBrewer, sp (>= 1.1-1), stats Timings: user system elapsed adegraphics 190.619 8.88 203.66 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 2 4 Check results summary: adegraphics ... OK rdepends_ade4 ... OK rdepends_ade4TkGUI ... OK rdepends_adespatial ... OK rdepends_adiv ... OK rdepends_Guerry ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_treespace ... NOTE * checking Rd cross-references ... NOTE