* using log directory ‘/srv/hornik/tmp/CRAN_pretest/adas.utils.Rcheck’
* using R Under development (unstable) (2024-12-12 r87438)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘adas.utils/DESCRIPTION’ ... OK
* this is package ‘adas.utils’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Paolo Bosetti <paolo.bosetti@unitn.it>’

New submission

Possibly misspelled words in DESCRIPTION:
  DoE (7:149)
  Trento (2:61, 7:67)

The Title field should be in title case. Current version is:
  ‘Utility functions for the ADAS course, University of Trento, Italy’
In title case that is:
  ‘Utility Functions for the ADAS Course, University of Trento, Italy’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘adas.utils’ can be installed ... [3s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘design_matrix.csv’ ‘dumpdata.R’ ‘setup.Rmd’ ‘setup.nb.html’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
pareto_chart:
  function(obj, ...)
pareto_chart.default:
  function(data, labels, values)

pareto_chart:
  function(obj, ...)
pareto_chart.lm:
  function(model)

as_tibble:
  function(x, ..., .rows, .name_repair, rownames)
as_tibble.alias.matrix:
  function(am, ..., .rows, .name_repair, rownames, compact)

plot:
  function(x, ...)
plot.alias.matrix:
  function(am, ..., compact)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] NOTE
as_tibble.alias.matrix: no visible binding for global variable
  ‘Effect.x’
as_tibble.alias.matrix: no visible binding for global variable ‘.’
as_tibble.alias.matrix: no visible binding for global variable
  ‘generator’
daniel_plot_hn: no visible binding for global variable ‘.’
daniel_plot_qq: no visible binding for global variable ‘value’
daniel_plot_qq: no visible binding for global variable ‘term’
fp_add_scale: no visible global function definition for ‘:=’
fp_add_scale: no visible binding for global variable ‘Y’
fp_add_scale: no visible global function definition for ‘last_col’
fp_alias_list: no visible binding for global variable ‘effect’
fp_alias_matrix: no visible binding for global variable ‘.’
fp_augment_axial: no visible binding for global variable ‘.’
fp_augment_axial: no visible binding for global variable ‘axial’
fp_augment_axial: no visible binding for global variable ‘center’
fp_augment_axial: no visible binding for global variable ‘StdOrder’
fp_design_matrix: no visible binding for global variable ‘.’
fp_design_matrix: no visible global function definition for ‘any_of’
fp_design_matrix: no visible binding for global variable ‘.rep’
fp_design_matrix: no visible binding for global variable ‘RunOrder’
fp_effect_names: no visible binding for global variable ‘.’
fp_effect_names: no visible binding for global variable ‘p’
fp_effect_names: no visible binding for global variable ‘w’
fp_effect_names: no visible binding for global variable ‘effect’
fp_fraction: no visible global function definition for ‘:=’
fp_gen2alias: no visible binding for global variable ‘.’
fp_merge_drs: no visible binding for global variable ‘.’
fp_read_csv: no visible binding for global variable ‘StdOrder’
fp_third_dr: no visible binding for global variable ‘.’
fp_write_csv: no visible binding for global variable ‘RunOrder’
pareto_chart.default: no visible binding for global variable ‘effect’
pareto_chart.default: no visible binding for global variable ‘cum’
pareto_chart.lm: no visible binding for global variable ‘effect’
plot.alias.matrix: no visible binding for global variable ‘Effect.x’
plot.alias.matrix: no visible binding for global variable ‘Effect.y’
plot.alias.matrix: no visible binding for global variable ‘generator’
print.alias.matrix: no visible binding for global variable ‘.’
Undefined global functions or variables:
  . .rep := Effect.x Effect.y RunOrder StdOrder Y any_of axial center
  cum effect generator last_col p term value w
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) chauvenet.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) chauvenet.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) chauvenet.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) chauvenet.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  daniel_plot_hn.Rd: gghalfnorm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘fp_alias’ ‘fp_alias_list’ ‘fp_defrel’ ‘fp_has_alias’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [2s/2s] OK
  Running ‘testthat.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [6s/6s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 WARNINGs, 5 NOTEs