* installing *source* package ‘adapt3’ ... ** this is package ‘adapt3’ version ‘2.0.9’ ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.1.0-1) 16.1.0’ g++-16 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-16/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/lefko3/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-16/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/lefko3/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c projection.cpp -o projection.o In file included from /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/LefkoUtils.h:8, from projection.cpp:10: /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/basic_funcs/mat_stuff.h: In function ‘Rcpp::DataFrame LefkoMats::supp_reassess(Rcpp::DataFrame, bool, Rcpp::Nullable >, Rcpp::Nullable >)’: /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/basic_funcs/mat_stuff.h:1672:12: warning: variable ‘esta2_used’ set but not used [-Wunused-but-set-variable=] 1672 | bool esta2_used {false}; | ^~~~~~~~~~ /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/basic_funcs/mat_stuff.h:1478:9: warning: variable ‘age_related_stages’ set but not used [-Wunused-but-set-variable=] 1478 | int age_related_stages {0}; | ^~~~~~~~~~~~~~~~~~ /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/basic_funcs/mat_stuff.h:1479:9: warning: variable ‘age_related_min_ages’ set but not used [-Wunused-but-set-variable=] 1479 | int age_related_min_ages {0}; | ^~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/AdaptUtils.h:7, from projection.cpp:11: ../inst/include/basic_funcs/main_utils.h: In function ‘void AdaptUtils::leslie_stageframe_updater(Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::DataFrame, int)’: ../inst/include/basic_funcs/main_utils.h:4475:9: warning: variable ‘good_max_age_values’ set but not used [-Wunused-but-set-variable=] 4475 | int good_max_age_values {0}; | ^~~~~~~~~~~~~~~~~~~ ../inst/include/basic_funcs/main_utils.h: In function ‘void AdaptUtils::batch_supplement_alterator(Rcpp::DataFrame&, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, bool, bool, bool, int)’: ../inst/include/basic_funcs/main_utils.h:4551:9: warning: variable ‘ce2_nas_length’ set but not used [-Wunused-but-set-variable=] 4551 | int ce2_nas_length {0}; | ^~~~~~~~~~~~~~ In file included from ../inst/include/AdaptUtils.h:8: ../inst/include/basic_funcs/mats_utils.h: In function ‘Rcpp::List AdaptMats::theoldpizzle_adapt3(const Rcpp::DataFrame&, const Rcpp::DataFrame&, const arma::mat&, int, int, int, int, int, int, bool)’: ../inst/include/basic_funcs/mats_utils.h:3763:9: warning: unused variable ‘nostages_nounborn’ [-Wunused-variable] 3763 | int nostages_nounborn = nostages - almostbornstages; | ^~~~~~~~~~~~~~~~~ projection.cpp: In function ‘Rcpp::List cleanup3(Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, double, double, int, int, bool, bool, bool)’: projection.cpp:3813:29: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 3813 | if (year_counter(i) == no_mainyears || j == 0) year_counter(i) = 0; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ projection.cpp: In function ‘void project3_fb_core(Rcpp::NumericMatrix&, Rcpp::List&, Rcpp::List&, Rcpp::List&, Rcpp::List&, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::LogicalVector, Rcpp::CharacterVector, int, int, int, int, double, double, bool, bool, bool, bool, bool, bool)’: projection.cpp:5193:31: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 5193 | if (year_counter(i) >= no_mainyears || current_time == 0) year_counter(i) = 0; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ projection.cpp: In function ‘Rcpp::List project3(Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, bool, bool, int, int, int, int, bool, double, double)’: projection.cpp:5891:8: warning: variable ‘pure_fleslie’ set but not used [-Wunused-but-set-variable=] 5891 | bool pure_fleslie {false}; // Are all function-based MPMs Leslie MPMs? | ^~~~~~~~~~~~ projection.cpp:5896:7: warning: variable ‘stageframe_count’ set but not used [-Wunused-but-set-variable=] 5896 | int stageframe_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:5897:7: warning: variable ‘stageframe_notNull_count’ set but not used [-Wunused-but-set-variable=] 5897 | int stageframe_notNull_count {0}; | ^~~~~~~~~~~~~~~~~~~~~~~~ projection.cpp:5898:7: warning: variable ‘supplement_count’ set but not used [-Wunused-but-set-variable=] 5898 | int supplement_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:5899:7: warning: variable ‘equivalence_count’ set but not used [-Wunused-but-set-variable=] 5899 | int equivalence_count {0}; | ^~~~~~~~~~~~~~~~~ projection.cpp:5900:7: warning: variable ‘start_count’ set but not used [-Wunused-but-set-variable=] 5900 | int start_count {0}; | ^~~~~~~~~~~ projection.cpp:5901:7: warning: variable ‘tweights_count’ set but not used [-Wunused-but-set-variable=] 5901 | int tweights_count {0}; | ^~~~~~~~~~~~~~ projection.cpp:5902:7: warning: variable ‘density_count’ set but not used [-Wunused-but-set-variable=] 5902 | int density_count {0}; | ^~~~~~~~~~~~~ projection.cpp:5903:7: warning: variable ‘entry_time_count’ set but not used [-Wunused-but-set-variable=] 5903 | int entry_time_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:5904:7: warning: variable ‘density_vr_count’ set but not used [-Wunused-but-set-variable=] 5904 | int density_vr_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:5905:7: warning: variable ‘sparse_vec_count’ set but not used [-Wunused-but-set-variable=] 5905 | int sparse_vec_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:5906:7: warning: variable ‘found_fleslie’ set but not used [-Wunused-but-set-variable=] 5906 | int found_fleslie {0}; | ^~~~~~~~~~~~~ projection.cpp: In function ‘Rcpp::List batch_project3(Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, bool, bool, int, int, int, int, bool, double, double)’: projection.cpp:7888:15: warning: variable ‘maxage_NAs’ set but not used [-Wunused-but-set-variable=] 7888 | int maxage_NAs {0}; | ^~~~~~~~~~ projection.cpp:8089:13: warning: unused variable ‘current_supplement_rows’ [-Wunused-variable] 8089 | int current_supplement_rows = static_cast(current_supplement_df.nrows()); | ^~~~~~~~~~~~~~~~~~~~~~~ projection.cpp:6596:8: warning: unused variable ‘sensitivity_bool’ [-Wunused-variable] 6596 | bool sensitivity_bool {false}; | ^~~~~~~~~~~~~~~~ projection.cpp: In function ‘Rcpp::List cleanup3_inv(Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, double, double, int, unsigned int, unsigned int)’: projection.cpp:8460:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 8460 | for (unsigned int sfi = 0; sfi < min_age_length; sfi++) { | ~~~~^~~~~~~~~~~~~~~~ projection.cpp:9061:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 9061 | for (int i = 0; i < variant_count; i++) { | ~~^~~~~~~~~~~~~~~ projection.cpp:9069:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 9069 | if (start_list_length != 1 && start_list_length != variant_count) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ projection.cpp:9148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 9148 | for (int i = 0; i < variant_count; i++) { | ~~^~~~~~~~~~~~~~~ projection.cpp:9572:28: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 9572 | if (di_age2(j) < finalage_int) { | ~~~~~~~~~~~^~~~~~~~~~~~~~ projection.cpp:9876:30: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 9876 | if (di_age2(j) < finalage_int) { | ~~~~~~~~~~~^~~~~~~~~~~~~~ projection.cpp:10021:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 10021 | if (entry_time_count != 1 && entry_time_count != var_per_run) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ projection.cpp:10031:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 10031 | for (int i = 0; i < var_per_run; i++) { | ~~^~~~~~~~~~~~~ projection.cpp:10239:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 10239 | for (int i = 0; i < variant_count; i++) { | ~~^~~~~~~~~~~~~~~ projection.cpp:10267:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 10267 | for (int i = 0; i < variant_count; i++) { | ~~^~~~~~~~~~~~~~~ projection.cpp:10291:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 10291 | for (int i = 0; i < variant_count; i++) { | ~~^~~~~~~~~~~~~~~ projection.cpp: In function ‘void ESS_optimizer_pre(Rcpp::DataFrame&, Rcpp::DataFrame&, Rcpp::DataFrame&, Rcpp::DataFrame&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::List&, Rcpp::List&, Rcpp::List&, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::IntegerVector, int, int, int, int, int, int, int, double, double, bool, bool, bool, bool, bool, double, int, int, int, int, int, int, double, bool)’: projection.cpp:12239:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 12239 | for (int i = 0; i < total_optima; i++) { | ~~^~~~~~~~~~~~~~ projection.cpp:12857:18: warning: unused variable ‘res_fitness_test’ [-Wunused-variable] 12857 | double res_fitness_test = current_round_fitness_values(0); | ^~~~~~~~~~~~~~~~ projection.cpp:12487:12: warning: variable ‘conv_test’ set but not used [-Wunused-but-set-variable=] 12487 | double conv_test {0.}; | ^~~~~~~~~ projection.cpp:12489:12: warning: variable ‘xE’ set but not used [-Wunused-but-set-variable=] 12489 | double xE {0.}; // test value to keep in memory from previous expansion round | ^~ projection.cpp:12490:12: warning: variable ‘xC_new’ set but not used [-Wunused-but-set-variable=] 12490 | double xC_new {0.}; // test value to keep in memory from previous contraction round | ^~~~~~ projection.cpp:13049:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 13049 | for (int i = 2; i < total_optima; i++) { | ~~^~~~~~~~~~~~~~ projection.cpp:13072:7: warning: unused variable ‘optim_rows’ [-Wunused-variable] 13072 | int optim_rows = static_cast(final_output_df.nrows()); | ^~~~~~~~~~ projection.cpp: In function ‘void ESS_optimizer_fb(Rcpp::DataFrame&, Rcpp::DataFrame&, Rcpp::DataFrame&, Rcpp::DataFrame&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::ivec&, Rcpp::List&, Rcpp::List&, Rcpp::List&, Rcpp::List&, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List&, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::DataFrame, Rcpp::DataFrame&, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::CharacterVector, Rcpp::CharacterVector, int, int, int, int, int, int, int, int, double, double, bool, bool, bool, bool, bool, double, int, int, int, int, int, int, bool, double, bool)’: projection.cpp:14092:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 14092 | for (int i = 0; i < total_optima; i++) { | ~~^~~~~~~~~~~~~~ projection.cpp:14912:18: warning: unused variable ‘res_fitness_test’ [-Wunused-variable] 14912 | double res_fitness_test = current_round_fitness_values(0); | ^~~~~~~~~~~~~~~~ projection.cpp:14430:12: warning: variable ‘conv_test’ set but not used [-Wunused-but-set-variable=] 14430 | double conv_test {0.}; | ^~~~~~~~~ projection.cpp:14432:12: warning: variable ‘xE’ set but not used [-Wunused-but-set-variable=] 14432 | double xE {0.}; // test value to keep in memory from previous expansion round | ^~ projection.cpp:14433:12: warning: variable ‘xC_new’ set but not used [-Wunused-but-set-variable=] 14433 | double xC_new {0.}; // test value to keep in memory from previous contraction round | ^~~~~~ projection.cpp:15103:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 15103 | for (int i = 2; i < total_optima; i++) { | ~~^~~~~~~~~~~~~~ projection.cpp:15129:7: warning: unused variable ‘optim_rows’ [-Wunused-variable] 15129 | int optim_rows = static_cast(final_output_df.nrows()); | ^~~~~~~~~~ projection.cpp: In function ‘Rcpp::List invade3(Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, double, int, int, int, double, double, double, int)’: projection.cpp:20055:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 20055 | if (!(variant_count >= var_per_run)) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ projection.cpp:19872:7: warning: unused variable ‘stageframe_count’ [-Wunused-variable] 19872 | int stageframe_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:19873:7: warning: variable ‘stageframe_notNull_count’ set but not used [-Wunused-but-set-variable=] 19873 | int stageframe_notNull_count {0}; | ^~~~~~~~~~~~~~~~~~~~~~~~ projection.cpp:19874:7: warning: unused variable ‘supplement_count’ [-Wunused-variable] 19874 | int supplement_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:19875:7: warning: variable ‘equivalence_count’ set but not used [-Wunused-but-set-variable=] 19875 | int equivalence_count {0}; | ^~~~~~~~~~~~~~~~~ projection.cpp:19876:7: warning: variable ‘start_count’ set but not used [-Wunused-but-set-variable=] 19876 | int start_count {0}; | ^~~~~~~~~~~ projection.cpp:19877:7: warning: variable ‘tweights_count’ set but not used [-Wunused-but-set-variable=] 19877 | int tweights_count {0}; | ^~~~~~~~~~~~~~ projection.cpp:19878:7: warning: variable ‘density_count’ set but not used [-Wunused-but-set-variable=] 19878 | int density_count {0}; | ^~~~~~~~~~~~~ projection.cpp:19880:7: warning: variable ‘entry_time_count’ set but not used [-Wunused-but-set-variable=] 19880 | int entry_time_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:19881:7: warning: variable ‘density_vr_count’ set but not used [-Wunused-but-set-variable=] 19881 | int density_vr_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:19882:7: warning: variable ‘sparse_vec_count’ set but not used [-Wunused-but-set-variable=] 19882 | int sparse_vec_count {0}; | ^~~~~~~~~~~~~~~~ projection.cpp:19894:8: warning: variable ‘prebreeding_bool’ set but not used [-Wunused-but-set-variable=] 19894 | bool prebreeding_bool {true}; | ^~~~~~~~~~~~~~~~ g++-16 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-16/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/lefko3/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c utilities.cpp -o utilities.o In file included from /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/LefkoUtils.h:8, from utilities.cpp:7: /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/basic_funcs/mat_stuff.h: In function ‘Rcpp::DataFrame LefkoMats::supp_reassess(Rcpp::DataFrame, bool, Rcpp::Nullable >, Rcpp::Nullable >)’: /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/basic_funcs/mat_stuff.h:1672:12: warning: variable ‘esta2_used’ set but not used [-Wunused-but-set-variable=] 1672 | bool esta2_used {false}; | ^~~~~~~~~~ /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/basic_funcs/mat_stuff.h:1478:9: warning: variable ‘age_related_stages’ set but not used [-Wunused-but-set-variable=] 1478 | int age_related_stages {0}; | ^~~~~~~~~~~~~~~~~~ /srv/hornik/tmp/CRAN_pretest/Library/lefko3/include/basic_funcs/mat_stuff.h:1479:9: warning: variable ‘age_related_min_ages’ set but not used [-Wunused-but-set-variable=] 1479 | int age_related_min_ages {0}; | ^~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/AdaptUtils.h:7, from utilities.cpp:8: ../inst/include/basic_funcs/main_utils.h: In function ‘void AdaptUtils::leslie_stageframe_updater(Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::DataFrame, int)’: ../inst/include/basic_funcs/main_utils.h:4475:9: warning: variable ‘good_max_age_values’ set but not used [-Wunused-but-set-variable=] 4475 | int good_max_age_values {0}; | ^~~~~~~~~~~~~~~~~~~ ../inst/include/basic_funcs/main_utils.h: In function ‘void AdaptUtils::batch_supplement_alterator(Rcpp::DataFrame&, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, bool, bool, bool, int)’: ../inst/include/basic_funcs/main_utils.h:4551:9: warning: variable ‘ce2_nas_length’ set but not used [-Wunused-but-set-variable=] 4551 | int ce2_nas_length {0}; | ^~~~~~~~~~~~~~ In file included from ../inst/include/AdaptUtils.h:8: ../inst/include/basic_funcs/mats_utils.h: In function ‘Rcpp::List AdaptMats::theoldpizzle_adapt3(const Rcpp::DataFrame&, const Rcpp::DataFrame&, const arma::mat&, int, int, int, int, int, int, bool)’: ../inst/include/basic_funcs/mats_utils.h:3763:9: warning: unused variable ‘nostages_nounborn’ [-Wunused-variable] 3763 | int nostages_nounborn = nostages - almostbornstages; | ^~~~~~~~~~~~~~~~~ g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-16/lib -Wl,-O1 -o adapt3.so RcppExports.o projection.o utilities.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-16/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R-d-gcc-16/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/adapt3.Rcheck/00LOCK-adapt3/00new/adapt3/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adapt3)