R Under development (unstable) (2026-10-26 r90766 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> # if (rlang::is_installed("stepcount") && rlang::is_installed("reticulate")) {
> if (requireNamespace("stepcount", quietly = TRUE, partial = TRUE) &&
+     requireNamespace("reticulate", quietly = TRUE)) {
+   try({
+     reticulate::py_require("stepcount==3.11.0", python_version = "3.10",
+                            action = "add")
+     reticulate::import("stepcount")
+   })
+ }
Error in py_module_import(module, convert = convert) : 
  ModuleNotFoundError: No module named 'stepcount'
Run `reticulate::py_last_error()` for details.
In addition: Warning message:
Some Python package requirements declared via `py_require()` are not installed in the selected Python environment: (C:/Users/CRAN/Documents/.virtualenvs/r-reticulate/Scripts/python.exe)
  stepcount==3.11.0 
> Sys.setenv(SSQ_PARALLEL = 0)
> library(testthat)
> library(actimetrics)
> 
> 
> test_check("actimetrics")
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Running floor_sec on time
Summarizing the variance
Calculating AI
Summarizing the variance
Calculating r, ENMO, and flooring time
Calculating all MAD measures
Calculating r, ENMO, and flooring time
Summarizing the variance
Calculating all MAD measures
Calculating r, ENMO, and flooring time
Calculating all MAD measures
Calculating r, ENMO, and flooring time
Calculating all MAD measures
Absolute values
Calculting trapezoids
Replacing first value as NA
Calculating AUCs
Absolute values
Calculting trapezoids
Replacing first value as NA
Calculating AUCs
Truncating Small AUCs
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Fixing Zeros with fix_zeros
Flagging data
Calculating ai0
Calculating MAD
Joining AI and MAD
Calculating MIMS
Calculating AC
Joining AC
Joining MIMS
Joining flags
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Detected gt3x file - reading in using acti_read_gt3x
Filling Zeros
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Running extrapolation
Running filtering
Running extrapolation
Running filtering
Running interpolation
Running extrapolation
Running filtering
Absolute values
Calculting trapezoids
Replacing first value as NA
Calculating AUCs
Truncating Small AUCs
================================================================================
[1] "Creating Downsampled Data"
[1] "Filtering Data"
[1] "Trimming Data"
[1] "Getting data back to 10Hz for accumulation"
[1] "Summing epochs"
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
[1] "Creating Downsampled Data"
[1] "Filtering Data"
[1] "Trimming Data"
[1] "Getting data back to 10Hz for accumulation"
[1] "Summing epochs"
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Loading chunk: 1
 There is not enough data to perform the GGIR calibration method. Returning data as read by read.gt3x.
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Detected gt3x file - reading in using acti_read_gt3x
Filling Zeros
Loading chunk: 1
 There is not enough data to perform the GGIR calibration method. Returning data as read by read.gt3x.
namespace 'stepcount' is already loaded so argument 'partial' will be ignored.
namespace 'stepcount' is already loaded so argument 'partial' will be ignored.
namespace 'stepcount' is already loaded so argument 'partial' will be ignored.
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Guessing sample_rate from the data
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Running floor_sec on time
Summarizing the variance
Calculating AI
Running floor_sec on time
Summarizing the variance
Calculating AI
Running floor_sec on time
Summarizing the variance
Calculating AI
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
namespace 'stepcount' is already loaded so argument 'partial' will be ignored.
namespace 'stepcount' is already loaded so argument 'partial' will be ignored.
namespace 'stepcount' is already loaded so argument 'partial' will be ignored.
Error in py_module_import(module, convert = convert) : 
  ModuleNotFoundError: No module named 'stepcount'
Run `reticulate::py_last_error()` for details.
Running floor_sec on time
Summarizing the variance
Calculating AI
Running floor_sec on time
Summarizing the variance
Calculating AI
Running floor_sec on time
Summarizing the variance
Calculating AI
Summarizing the variance
Calculating r, ENMO, and flooring time
Calculating all MAD measures
Calculating r, ENMO, and flooring time
Calculating all MAD measures
Calculating r, ENMO, and flooring time
Calculating all MAD measures
Absolute values
Calculting trapezoids
Replacing first value as NA
Calculating AUCs
Truncating Small AUCs
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
Fixing Zeros with fix_zeros
Flagging data
Flagging Spikes
Flagging Interval Jumps
Flagging Spikes at Second-level
Flagging Repeated Values
Flagging Device Limit Values
Flagging Zero Values
Flagging 'Impossible' Values
Calculating ai0
Calculating MAD
Joining AI and MAD
Calculating MIMS
================================================================================
Calculating AC
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
[1] "Creating Downsampled Data"
[1] "Filtering Data"
[1] "Trimming Data"
[1] "Getting data back to 10Hz for accumulation"
[1] "Summing epochs"
Joining AC
Joining MIMS
Joining flags
================================================================================
================================================================================
================================================================================
================================================================================
Calculating r, ENMO, and flooring time
Summarizing the variance
Calculating all MAD measures
================================================================================
namespace 'agcounts' is already loaded so argument 'partial' will be ignored.
[1] "Creating Downsampled Data"
[1] "Filtering Data"
[1] "Trimming Data"
[1] "Getting data back to 10Hz for accumulation"
[1] "Summing epochs"
[ FAIL 0 | WARN 8 | SKIP 2 | PASS 348 ]

══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• agcounts < 0.7.1 crashes on a sub-second offset start (1):
  'test-regressions.R:258:3'
• stepcount::stepcount_check() is not TRUE (1): 'test-stepcount.R:10:3'

[ FAIL 0 | WARN 8 | SKIP 2 | PASS 348 ]
> 
> proc.time()
   user  system elapsed 
 108.01    8.95  147.01