Package check result: NOTE Check: CRAN incoming feasibility, Result: NOTE Maintainer: ‘Shawn Garbett ’ Possibly misspelled words in DESCRIPTION: Holzmann (40:53) Klar (40:67) Changes to worse in reverse depends: Package: bullseye Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘calc_pairwise.Rmd’ using rmarkdown --- finished re-building ‘calc_pairwise.Rmd’ --- re-building ‘integrating.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/bullseye.Rcheck/vign_test/bullseye/vignettes/integrating_files/figure-html/corrplot_assoc-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42328 bytes Input file size = 42466 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35424 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35424 Output IDAT size = 35424 bytes (6904 bytes decrease) Output file size = 35502 bytes (6964 bytes = 16.40% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/bullseye.Rcheck/vign_test/bullseye/vignettes/integrating_files/figure-html/unnamed-chunk-4-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15408 bytes Input file size = 15498 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13618 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13561 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13561 Output IDAT size = 13561 bytes (1847 bytes decrease) Output file size = 13639 bytes (1859 bytes = 12.00% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/bullseye.Rcheck/vign_test/bullseye/vignettes/integrating_files/figure-html/unnamed-chunk-5-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43089 bytes Input file size = 43227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36670 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36670 Output IDAT size = 36670 bytes (6419 bytes decrease) Output file size = 36748 bytes (6479 bytes = 14.99% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/bullseye.Rcheck/vign_test/bullseye/vignettes/integrating_files/figure-html/unnamed-chunk-6-1.png 384x384 pixels, 8 bits/pixel, 246 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4859 bytes Input file size = 5687 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4108 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4086 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4086 Output IDAT size = 4086 bytes (773 bytes decrease) Output file size = 4164 bytes (1523 bytes = 26.78% decrease) --- finished re-building ‘integrating.Rmd’ --- re-building ‘vis_pairwise.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/bullseye.Rcheck/vign_test/bullseye/vignettes/vis_pairwise_files/figure-html/unnamed-chunk-3-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14161 bytes Input file size = 14251 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12795 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12500 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12500 Output IDAT size = 12500 bytes (1661 bytes decrease) Output file size = 12578 bytes (1673 bytes = 11.74% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/bullseye.Rcheck/vign_test/bullseye/vignettes/vis_pairwise_files/figure-html/unnamed-chunk-10-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27031 bytes Input file size = 27145 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20358 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20358 Output IDAT size = 20358 bytes (6673 bytes decrease) Output file size = 20436 bytes (6709 bytes = 24.72% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/bullseye.Rcheck/vign_test/bullseye/vignettes/vis_pairwise_files/figure-html/unnamed-chunk-11-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43162 bytes Input file size = 43300 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35768 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35768 Output IDAT size = 35768 bytes (7394 bytes decrease) Output file size = 35846 bytes (7454 bytes = 17.21% decrease) Quitting from lines 175-178 [unnamed-chunk-13] (vis_pairwise.Rmd) Error: processing vignette 'vis_pairwise.Rmd' failed with diagnostics: Internal error. Variable category misspecified. --- failed re-building ‘vis_pairwise.Rmd’ SUMMARY: processing the following file failed: ‘vis_pairwise.Rmd’ Error: Vignette re-building failed. Execution halted