create_test_abnfit_mle <- function() { suppressWarnings({ # load data # load(file = "tests/testthat/testdata/n_250_k_2_groups_Even_mp_7_nodedists_Balanced_s_04_graph1.Rdata") load(file = "testdata/n_250_k_2_groups_Even_mp_7_nodedists_Balanced_s_04_graph1.Rdata") mycache <- buildScoreCache(data.df = data$data, data.dists = data$dists, method = "mle", max.parents = data$max.parents, group.var = NULL, debugging = FALSE, verbose = FALSE) # Structure Learning most_prob_dag <- mostProbable(score.cache = mycache, verbose = FALSE) # Fit model (this would be actual abn fit) fitAbn(object = most_prob_dag, method = "mle") }) } create_test_abnfit_mle_groups <- function() { suppressMessages({ suppressWarnings({ # load data # load(file = "tests/testthat/testdata/n_250_k_2_groups_Even_p_6_nodedists_Balanced_s_04_graph1.rda") load(file = "testdata/n_250_k_2_groups_Even_p_6_nodedists_Balanced_s_04_graph1.rda") # no poisson because of fitting issues data <- n_250_k_2_groups_Even_p_6_nodedists_Balanced_s_04_graph1$data dists <- n_250_k_2_groups_Even_p_6_nodedists_Balanced_s_04_graph1$dists max.parents <- n_250_k_2_groups_Even_p_6_nodedists_Balanced_s_04_graph1$max.parents groups_samples <- n_250_k_2_groups_Even_p_6_nodedists_Balanced_s_04_graph1$groups_samples # Add group variable to data and data dists data$groups_samples <- as.factor(groups_samples) mycache <- buildScoreCache(data.df = data, data.dists = dists, method = "mle", max.parents = max.parents, group.var = "groups_samples", debugging = FALSE, verbose = FALSE) # Structure Learning most_prob_dag <- mostProbable(score.cache = mycache, verbose = FALSE) # Fit model abn_fit <- fitAbn(object = most_prob_dag, method = "mle", group.var = "groups_samples", verbose = FALSE, debugging = FALSE) # Store the fitted object for testing because fitting with groups can be slow save(abn_fit, file = "tests/testthat/testdata/abnfit_mle_groups.Rdata") }) }) }