R Under development (unstable) (2024-03-15 r86143 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(abn) abn version 3.0.6 (2024-03-16) is loaded. To cite the package 'abn' in publications call: citation('abn'). Attaching package: 'abn' The following object is masked from 'package:base': factorial > > require(RhpcBLASctl) Loading required package: RhpcBLASctl > omp_set_num_threads(2) > > test_check("abn") Loading required package: Matrix Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Loading required package: sp This is INLA_24.02.09 built 2024-02-09 03:35:28 UTC. - See www.r-inla.org/contact-us for how to get help. - List available models/likelihoods/etc with inla.list.models() - Use inla.doc() to access documentation Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged boundary (singular) fit: see help('isSingular') [ FAIL 0 | WARN 0 | SKIP 57 | PASS 388 ] ══ Skipped tests (57) ══════════════════════════════════════════════════════════ • BuildScoreCache(method=mle) crashes with Poisson nodes (1): 'test-fitabn_mle.R:132:3' • INLA is not tested on CRAN (2): 'test-mostprobable.R:203:5', 'test-search_hillclimber.R:77:7' • Numerical results are not tested for method='bayes' (2): 'test-build_score_cache_bayes.R:51:3', 'test-build_score_cache_bayes.R:104:3' • On CRAN (27): 'test-abn-methods.R:212:3', 'test-abn-methods.R:237:3', 'test-abn-methods.R:262:3', 'test-abn-methods.R:287:3', 'test-abn-methods.R:312:3', 'test-abn-methods.R:337:3', 'test-abn-methods.R:362:3', 'test-abn-methods.R:387:3', 'test-abn-methods.R:412:3', 'test-build_score_cache.R:380:3', 'test-build_score_cache.R:428:3', 'test-calc_node_inla_glm.R:2:3', 'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3', 'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3', 'test-fitabn.R:190:3', 'test-fitabn_bayes.R:2:3', 'test-mostprobable.R:11:3', 'test-mostprobable.R:78:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3', 'test-simulateabn.R:490:3', 'test-tographviz.R:27:3', 'test-tographviz.R:171:3' • Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3' • empty test (24): 'test-abn-methods.R:15:1', 'test-abn-methods.R:71:1', 'test-abn-methods.R:116:1', 'test-abn-methods.R:185:1', 'test-build_score_cache.R:326:1', 'test-build_score_cache_mle.R:1:1', 'test-build_score_cache_mle.R:34:1', 'test-build_score_cache_mle.R:84:1', 'test-build_score_cache_mle.R:119:1', 'test-build_score_cache_mle.R:155:1', 'test-build_score_cache_mle.R:214:1', 'test-build_score_cache_mle.R:252:1', 'test-fitabn_mle.R:1:1', 'test-fitabn_mle.R:35:1', 'test-fitabn_mle.R:84:1', 'test-fitabn_mle.R:195:1', 'test-fitabn_mle.R:283:1', 'test-fitabn_mle.R:379:1', 'test-fitabn_mle.R:475:1', 'test-fitabn_mle.R:585:1', 'test-simulateabn.R:617:1', 'test-simulateabn.R:688:1', 'test-simulateabn.R:787:1', 'test-simulateabn.R:887:1' [ FAIL 0 | WARN 0 | SKIP 57 | PASS 388 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot > > proc.time() user system elapsed 226.35 2.14 228.48