* using log directory ‘/srv/hornik/tmp/CRAN/abn.Rcheck’
* using R Under development (unstable) (2024-01-17 r85813)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* using option ‘--no-tests’
* checking for file ‘abn/DESCRIPTION’ ... OK
* this is package ‘abn’ version ‘3.0.5’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Matteo Delucchi <matteo.delucchi@math.uzh.ch>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  INLA (58:272)
  acyclic (54:129)
  multivariable (55:262)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-12-21 as issues were not corrected
    even on re-submission.
  Additional_repositories: https://inla.r-inla-download.org/R/stable/

Suggests or Enhances not in mainstream repositories:
  INLA
Availability using Additional_repositories specification:
  INLA   yes   https://inla.r-inla-download.org/R/stable/
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘abn’ can be installed ... [71s/71s] OK
* used C compiler: ‘Debian clang version 17.0.6 (3)’
* used C++ compiler: ‘Debian clang version 17.0.6 (3)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] ERROR
Running examples in ‘abn-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fitAbn
> ### Title: Fit an additive Bayesian network model
> ### Aliases: fitAbn fitAbn.bayes fitAbn.mle regressionLoop
> ### Keywords: models
> 
> ### ** Examples
> 
> ## Built-in dataset with a subset of cols
> mydat <- ex0.dag.data[,c("b1","b2","b3","g1","b4","p2","p4")]
> 
> ## setup distribution list for each node
> mydists <- list(b1="binomial", b2="binomial", b3="binomial", g1="gaussian",
+                 b4="binomial", p2="poisson", p4="poisson")
> 
> ## Null model - all independent variables
> mydag.empty <- matrix(0, nrow=7, ncol=7)
> colnames(mydag.empty) <- rownames(mydag.empty) <- names(mydat)
> 
> ## Now fit the model to calculate its goodness-of-fit
> myres <- fitAbn(dag=mydag.empty,
+                 data.df=mydat,
+                 data.dists=mydists)
Error in library(p, character.only = TRUE) : 
  there is no package called ‘INLA’
Calls: fitAbn -> fitAbn.bayes -> %do% -> <Anonymous> -> library
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... SKIPPED
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/0s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs