R Under development (unstable) (2023-09-03 r85052 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(abn)
abn version 3.0.0 (2022-09-01) is loaded.
To cite the package 'abn' in publications call: citation('abn').

Attaching package: 'abn'

The following object is masked from 'package:base':

    factorial

> 
> test_check("abn")

Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged

Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged

Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged

Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')

Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')

Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged

Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged

Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged

Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')

Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
boundary (singular) fit: see help('isSingular')
[ FAIL 0 | WARN 0 | SKIP 37 | PASS 444 ]

══ Skipped tests (37) ══════════════════════════════════════════════════════════
• BuildScoreCache(method=mle) crashes with Poisson nodes (1):
  'test-fitabn_mle.R:132:3'
• Numerical results are not tested for method='bayes' (2):
  'test-build_score_cache_bayes.R:51:3', 'test-build_score_cache_bayes.R:104:3'
• On CRAN (3): 'test-plot-abn.R:34:3', 'test-tographviz.R:27:3',
  'test-tographviz.R:171:3'
• Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
• calc.node.inla.glm() test not yet implemented. (1):
  'test-calc_node_inla_glm.R:2:3'
• calc.node.inla.glmm() test not yet implemented. (1):
  'test-calc_node_inla_glmm.R:2:3'
• empty test (26): 'test-abn-methods.R:15:1', 'test-abn-methods.R:71:1',
  'test-abn-methods.R:186:1', 'test-abn-methods.R:396:1',
  'test-build_score_cache.R:316:1', 'test-build_score_cache.R:369:1',
  'test-build_score_cache_mle.R:1:1', 'test-build_score_cache_mle.R:34:1',
  'test-build_score_cache_mle.R:84:1', 'test-build_score_cache_mle.R:119:1',
  'test-build_score_cache_mle.R:155:1', 'test-build_score_cache_mle.R:214:1',
  'test-build_score_cache_mle.R:252:1', 'test-fitabn_mle.R:1:1',
  'test-fitabn_mle.R:35:1', 'test-fitabn_mle.R:84:1',
  'test-fitabn_mle.R:195:1', 'test-fitabn_mle.R:283:1',
  'test-fitabn_mle.R:379:1', 'test-fitabn_mle.R:475:1',
  'test-fitabn_mle.R:584:1', 'test-mostprobable.R:163:1',
  'test-search_hillclimber.R:48:1', 'test-simulateabn.R:556:1',
  'test-simulateabn.R:627:1', 'test-simulateabn.R:726:1'
• getmarginals() tests not yet implemented. (1): 'test-getmarginals.R:2:3'
• plotting for abnHillClimber is not up to date with searchHillClimber()'s
  output. (1): 'test-abn-methods.R:117:3'

[ FAIL 0 | WARN 0 | SKIP 37 | PASS 444 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
> 
> proc.time()
   user  system elapsed 
 382.67    3.93  391.00