R Under development (unstable) (2025-01-08 r87545 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(aPEAR)
> 
> test_check("aPEAR")

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

[ FAIL 1 | WARN 0 | SKIP 1 | PASS 106 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-prepareEnrichment.R:1:1'

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cluster.R:60:3'): pathwayClusters returns something for spectral clustering ──
Error in `eval(code, test_env)`: object 'sim' not found
Backtrace:
    ▆
 1. └─aPEAR:::pathwayClusters(sim, method = "s") at test-cluster.R:60:3
 2.   └─base::nrow(sim)

[ FAIL 1 | WARN 0 | SKIP 1 | PASS 106 ]
Error: Test failures
Execution halted