* using log directory 'd:/RCompile/CRANincoming/R-devel/aLBI.Rcheck'
* using R Under development (unstable) (2024-07-02 r86866 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'aLBI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'aLBI' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Ataher Ali <ataher.cu.ms@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  aLBI (3:8)

The Title field starts with the package name.
The Title field should be in title case. Current version is:
  'aLBI - a simple r package for estimating Length-Based Indicators and Fish Stock Assessment'
In title case that is:
  'aLBI - a Simple r Package for Estimating Length-Based Indicators and Fish Stock Assessment'

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  Example/.RData
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.

CRAN-pack does not know about
  Example/.RData
* checking for portable file names ... WARNING
Found the following files with non-portable file names:
  Plots/Boxplot showing different lengths.png
  Plots/Density of Different Lengths.png
  Plots/Estimated Froese indicators vs target plot.png
  Plots/FreqDist of Different Length.png
  Plots/Frequency distribution and lenghts with mean and confidence intervals.png
  Plots/Frequency distribution model plot.png
  Read ME.txt
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'aLBI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  'Data' 'Example' 'Plots' 'Read ME.txt' 'docs'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
FishPar: no visible global function definition for 'complete.cases'
FishPar : <anonymous>: no visible global function definition for
  'quantile'
FishPar: no visible global function definition for 'par'
FishPar: no visible global function definition for 'hist'
FishPar: no visible global function definition for 'abline'
FishPar: no visible global function definition for 'segments'
FishPar: no visible global function definition for 'density'
FishPar: no visible global function definition for 'boxplot'
FishPar: no visible global function definition for 'barplot'
FishPar: no visible global function definition for 'loess'
FishPar: no visible global function definition for 'lines'
FishPar: no visible global function definition for 'predict'
FishPar: no visible global function definition for 'legend'
FishPar: no visible global function definition for 'box'
FishPar: no visible global function definition for 'axis'
FishPar: no visible global function definition for 'rect'
FishPar: no visible global function definition for 'text'
Undefined global functions or variables:
  abline axis barplot box boxplot complete.cases density hist legend
  lines loess par predict quantile rect segments text
Consider adding
  importFrom("graphics", "abline", "axis", "barplot", "box", "boxplot",
             "hist", "legend", "lines", "par", "rect", "segments",
             "text")
  importFrom("stats", "complete.cases", "density", "loess", "predict",
             "quantile")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'FishSS.Rd':
  \examples lines wider than 100 characters:
                        E = rnorm(10), F = rnorm(10), G = rnorm(10), H = rnorm(10), I = rnorm(10), J = rnorm(10))

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'CPdata' 'csvlenfreq' 'lenfreq01' 'lenfreq02'
Undocumented data sets:
  'CPdata' 'csvlenfreq' 'lenfreq01' 'lenfreq02'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'LC.xlsx' 'PT.xlsx'
Please use e.g. 'inst/extdata' for non-R data files

* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  'Intriduction.R' 'Intriduction.Rmd' 'Introduction.html'
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking package vignettes ... NOTE
Package has 'vignettes' subdirectory but apparently no vignettes.
Perhaps the 'VignetteBuilder' information is missing from the
DESCRIPTION file?
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 4 WARNINGs, 6 NOTEs