* using log directory 'd:/RCompile/CRANincoming/R-devel/XYlabmiR.Rcheck'
* using R Under development (unstable) (2024-10-21 r87258 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'XYlabmiR/DESCRIPTION' ... OK
* this is package 'XYlabmiR' version '0.0.0.9000'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Xuyang Yi <627251009@qq.com>'

New submission

Version contains large components (0.0.0.9000)

Possibly misspelled words in DESCRIPTION:
  mRNA (2:14)
  miRNA (2:8, 10:53)

The Title field should be in title case. Current version is:
  'miRNA-mRNA-protein analysis'
In title case that is:
  'miRNA-mRNA-Protein Analysis'

Size of tarball: 87050993 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'XYlabmiR' can be installed ... OK
* checking installed package size ... INFO
  installed size is 104.2Mb
  sub-directories of 1Mb or more:
    extdata  104.1Mb
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
calculate_final_weights: no visible global function definition for ':='
calculate_final_weights: no visible binding for global variable
  'final_weight'
calculate_final_weights: no visible binding for global variable
  'centrality'
calculate_final_weights: no visible binding for global variable
  'mirna_count'
calculate_node_importance: no visible global function definition for
  'as.data.table'
calculate_node_importance: no visible global function definition for
  ':='
calculate_node_importance: no visible binding for global variable
  'protein1'
calculate_node_importance: no visible binding for global variable
  'protein2'
calculate_node_importance: no visible global function definition for
  'useEnsembl'
calculate_node_importance: no visible global function definition for
  'getBM'
calculate_node_importance: no visible global function definition for
  'setnames'
calculate_node_importance: no visible binding for global variable
  'gene1'
calculate_node_importance: no visible binding for global variable
  'gene2'
calculate_node_importance: no visible global function definition for
  'graph_from_data_frame'
calculate_node_importance: no visible global function definition for
  '.'
calculate_node_importance: no visible binding for global variable
  'combined_score'
calculate_node_importance: no visible global function definition for
  'graph.strength'
calculate_node_importance: no visible global function definition for
  'data.table'
calculate_node_importance: no visible binding for global variable
  'gene'
get_mirna_gene_relationship: no visible global function definition for
  'fread'
get_mirna_gene_relationship: no visible binding for global variable
  '.N'
get_mirna_gene_relationship: no visible binding for global variable
  'mRNA'
get_mirna_gene_relationship: no visible global function definition for
  'setnames'
visualize_network: no visible global function definition for 'fread'
visualize_network: no visible global function definition for ':='
visualize_network: no visible binding for global variable 'protein1'
visualize_network: no visible binding for global variable 'protein2'
visualize_network: no visible global function definition for
  'useEnsembl'
visualize_network: no visible global function definition for 'getBM'
visualize_network: no visible global function definition for 'setnames'
visualize_network: no visible binding for global variable 'gene1'
visualize_network: no visible binding for global variable 'gene2'
visualize_network: no visible global function definition for
  'graph_from_data_frame'
visualize_network: no visible global function definition for '.'
visualize_network: no visible binding for global variable
  'combined_score'
visualize_network: no visible global function definition for 'V'
visualize_network: no visible global function definition for 'V<-'
visualize_network: no visible global function definition for 'E'
visualize_network: no visible global function definition for 'E<-'
visualize_network: no visible global function definition for 'ggraph'
visualize_network: no visible global function definition for
  'geom_edge_link'
visualize_network: no visible global function definition for 'aes'
visualize_network: no visible binding for global variable 'width'
visualize_network: no visible global function definition for
  'geom_node_point'
visualize_network: no visible binding for global variable 'size'
visualize_network: no visible global function definition for
  'geom_node_text'
visualize_network: no visible binding for global variable 'label'
visualize_network: no visible binding for global variable 'mirna_count'
visualize_network: no visible global function definition for
  'scale_size'
visualize_network: no visible global function definition for 'labs'
visualize_network: no visible global function definition for
  'theme_void'
Undefined global functions or variables:
  . .N := E E<- V V<- aes as.data.table centrality combined_score
  data.table final_weight fread gene gene1 gene2 geom_edge_link
  geom_node_point geom_node_text getBM ggraph graph.strength
  graph_from_data_frame label labs mRNA mirna_count protein1 protein2
  scale_size setnames size theme_void useEnsembl width
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [235s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                           user system elapsed
calculate_final_weights   72.16  56.83  168.40
calculate_node_importance 55.20  10.31   62.64
* checking PDF version of manual ... [18s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
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               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 于 (U+4E8E)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 网 (U+7F51)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 络 (U+7EDC)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 分 (U+5206)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 析 (U+6790)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 用 (U+7528)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 于 (U+4E8E)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 基 (U+57FA)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 因 (U+56E0)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 转 (U+8F6C)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 换 (U+6362)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 读 (U+8BFB)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 取 (U+53D6)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 和 (U+548C)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 假 (U+5047)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 设 (U+8BBE)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 是 (U+662F)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 一 (U+4E00)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 个 (U+4E2A)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 已 (U+5DF2)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 有 (U+6709)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 的 (U+7684)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 基 (U+57FA)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 因 (U+56E0)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 列 (U+5217)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character 表 (U+8868)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 3 NOTEs