library(WayFindR) library(Rgraphviz) ## input directly from file xmlfile <- system.file("pathways/kegg_hsa00510.xml", package = "WayFindR") graf <- KGMLtoIgraph(xmlfile) set.seed(24086) L <- igraph::layout_with_kk(graf) plot(graf, layout = L) ## FAILS because of multiple edges: try( RA <- as.graphNEL(graf) ) xmlfile <- system.file("pathways/WP3850.gpml", package = "WayFindR") G <- GPMLtoIgraph(xmlfile) set.seed(13579) GN <- as.graphNEL(G) plot(GN)