library(WayFindR) ## input directly from file xmlfile <- system.file("pathways/kegg_hsa00510.xml", package = "WayFindR") entries <- collectEntries(xmlfile, "one") class(entries) table(entries$Type) head(entries) reac <- collectReactions(xmlfile) dim(reac) table(reac$MIM) # all irreversible rela <- collectRelations(xmlfile) class(rela) dim(rela) table(rela$MIM)