library(WayFindR) xmlfile <- system.file("pathways/WP3850.gpml", package = "WayFindR") gr <- GPMLtoIgraph(xmlfile) cyc <- findCycles(gr) cyc lapply(cyc, interpretCycle, graph = gr) S <- WayFindR:::cycleSubgraph(gr, cyc) #set.seed(13579) #L <- igraph::layout_with_graphopt(G) #plot(G, layout=L)