* using log directory ‘/srv/hornik/tmp/CRAN/WES.Rcheck’
* using R Under development (unstable) (2024-07-02 r86867)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (1+b1)
    Debian flang-new version 18.1.8 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘WES/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘WES’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/11s] NOTE
Maintainer: ‘John R Giles <john.giles@gatesfoundation.org>’

New submission

Possibly misspelled words in DESCRIPTION:
  WES (8:75)

Author field should be Authors@R.  Current value is:
  c(person("John R", "Giles", role=c("aut", "cre"), email="john.giles@gatesfoundation.org"))

Found the following (possibly) invalid URLs:
  URL: 
    From: inst/doc/metadata_functions.html
    Message: Empty URL
  URL: https://cran.r-project.org/web/packages/elevatr/index.html
    From: man/download_elevation_data.Rd
          man/get_elevation_data.Rd
          inst/doc/metadata_functions.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/exactextractr/index.html
    From: inst/doc/metadata_functions.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/openmeteo/index.html
    From: man/get_precip_data.Rd
          man/get_river_discharge_data.Rd
          man/get_temp_data.Rd
          inst/doc/metadata_functions.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/raster/index.html
    From: inst/doc/metadata_functions.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/whitebox/index.html
    From: man/get_hydro_data.Rd
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://gilesjohnr.github.io/WES/articles/amplification_efficiency.html (moved to https://www.r-wes.com/articles/amplification_efficiency.html)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/articles/calc_hydro_variables.html (moved to https://www.r-wes.com/articles/calc_hydro_variables.html)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/articles/calc_local_population.html (moved to https://www.r-wes.com/articles/calc_local_population.html)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/articles/derivative_quantities.html#absolute-quantification-calculating-the-number-of-target-gene-copies (moved to https://www.r-wes.com/articles/derivative_quantities.html#absolute-quantification-calculating-the-number-of-target-gene-copies)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/articles/derivative_quantities.html#relative-quantification-calculating-the-fold-change-in-gene-expression (moved to https://www.r-wes.com/articles/derivative_quantities.html#relative-quantification-calculating-the-fold-change-in-gene-expression)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/articles/get_admin_data.html (moved to https://www.r-wes.com/articles/get_admin_data.html)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/articles/get_climate_data.html (moved to https://www.r-wes.com/articles/get_climate_data.html)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/articles/metadata_functions.html (moved to https://www.r-wes.com/articles/metadata_functions.html)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/articles/template_WES_data.html (moved to https://www.r-wes.com/articles/template_WES_data.html)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/download_admin_data.html (moved to https://www.r-wes.com/reference/download_admin_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/download_elevation_data.html (moved to https://www.r-wes.com/reference/download_elevation_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/download_worldpop_data.html (moved to https://www.r-wes.com/reference/download_worldpop_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_admin_data.html (moved to https://www.r-wes.com/reference/get_admin_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_elevation_data.html (moved to https://www.r-wes.com/reference/get_elevation_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_esi_data.html (moved to https://www.r-wes.com/reference/get_esi_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_hydro_data.html (moved to https://www.r-wes.com/reference/get_hydro_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_population_catchment.html (moved to https://www.r-wes.com/reference/get_population_catchment.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_population_radius.html (moved to https://www.r-wes.com/reference/get_population_radius.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_precip_data.html (moved to https://www.r-wes.com/reference/get_precip_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_river_discharge_data.html (moved to https://www.r-wes.com/reference/get_river_discharge_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/get_temp_data.html (moved to https://www.r-wes.com/reference/get_temp_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://gilesjohnr.github.io/WES/reference/template_WES_data.html (moved to https://www.r-wes.com/reference/template_WES_data.html)
    From: inst/doc/metadata_functions.html
    Status: 301
    Message: Moved Permanently
  URL: https://www.thermofisher.com/us/en/home/life-science/pcr/real-time-pcr/real-time-pcr-learning-center/real-time-pcr-basics.html (moved to https://www.thermofisher.com/at/en/home/life-science/pcr/real-time-pcr/real-time-pcr-learning-center/real-time-pcr-basics.html)
    From: inst/doc/derivative_quantities.html
    Status: 301
    Message: Moved Permanently
  URL: https://www.thermofisher.com/us/en/home/life-science/pcr/real-time-pcr/real-time-pcr-learning-center/real-time-pcr-basics/efficiency-real-time-pcr-qpcr.html (moved to https://www.thermofisher.com/at/en/home/life-science/pcr/real-time-pcr/real-time-pcr-learning-center/real-time-pcr-basics/efficiency-real-time-pcr-qpcr.html)
    From: inst/doc/amplification_efficiency.html
    Status: 301
    Message: Moved Permanently
The canonical URL of the CRAN page for a package is 
  https://CRAN.R-project.org/package=pkgname
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

The Title field should be in title case. Current version is:
  ‘Tools for analyzing environmental sampling data’
In title case that is:
  ‘Tools for Analyzing Environmental Sampling Data’

Size of tarball: 12633289 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘WES’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [7s/7s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE