* using log directory ‘/srv/hornik/tmp/CRAN_pretest/WARDEN.Rcheck’
* using R Under development (unstable) (2025-10-07 r88905)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (7)
    Debian flang-new version 19.1.7 (7)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘WARDEN/DESCRIPTION’ ... OK
* this is package ‘WARDEN’ version ‘2.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/6s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘WARDEN’ can be installed ... [27s/27s] OK
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/13s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) add_item.Rd:30: Lost braces; missing escapes or markup?
    30 | e.g. add_item(input = {a <- 5})
       |                       ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [10s/10s] ERROR
Running examples in ‘WARDEN-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: run_sim_parallel
> ### Title: Run simulations in parallel mode (at the simulation level)
> ### Aliases: run_sim_parallel
> 
> ### ** Examples
> 
> library(magrittr)
> common_all_inputs <-add_item(
+ util.sick = 0.8,
+ util.sicker = 0.5,
+ cost.sick = 3000,
+ cost.sicker = 7000,
+ cost.int = 1000,
+ coef_noint = log(0.2),
+ HR_int = 0.8,
+ drc = 0.035, #different values than what's assumed by default
+ drq = 0.035,
+ random_seed_sicker_i = sample.int(100000,5,replace = FALSE)
+ )
> 
> common_pt_inputs <- add_item(death= max(0.0000001,rnorm(n=1, mean=12, sd=3))) 
> 
> unique_pt_inputs <- add_item(fl.sick = 1,
+                              q_default = util.sick,
+                              c_default = cost.sick + if(arm=="int"){cost.int}else{0}) 
>                              
> init_event_list <- 
+ add_tte(arm=c("noint","int"), evts = c("sick","sicker","death") ,input={
+   sick <- 0
+   sicker <- draw_tte(1,dist="exp",
+    coef1=coef_noint, beta_tx = ifelse(arm=="int",HR_int,1),
+    seed = random_seed_sicker_i[i])
+   
+ })   
> 
> evt_react_list <-
+ add_reactevt(name_evt = "sick",
+              input = {}) %>%
+   add_reactevt(name_evt = "sicker",
+                input = {
+                  q_default <- util.sicker
+                  c_default <- cost.sicker + if(arm=="int"){cost.int}else{0}
+                  fl.sick <- 0
+                }) %>%
+   add_reactevt(name_evt = "death",
+                input = {
+                  q_default <- 0
+                  c_default <- 0
+                  curtime <- Inf
+                }) 
>                
> util_ongoing <- "q_default"
> cost_ongoing <- "c_default"
>                           
> 
> run_sim_parallel(arm_list=c("int","noint"),
+ common_all_inputs = common_all_inputs,
+ common_pt_inputs = common_pt_inputs,
+ unique_pt_inputs = unique_pt_inputs,
+ init_event_list = init_event_list,
+ evt_react_list = evt_react_list,
+ util_ongoing_list = util_ongoing,
+ cost_ongoing_list = cost_ongoing,
+ npats = 2,
+ n_sim = 1,
+ psa_bool = FALSE,
+ ipd = 1,
+ ncores = 1)
Analysis number: 1
Simulation number: 1
Warning: Caught simpleError. Canceling all iterations ...
Error in get("continue_on_error", caller, inherits = TRUE) : 
  object 'continue_on_error' not found
Calls: run_sim_parallel ... tryCatchList -> tryCatchOne -> <Anonymous> -> onError
setup:common_all_inputs; Analysis 1; Simulation 1; 
An error occurred somewhere. Traceback available through traceback()
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [10s/10s] OK
  Running ‘testthat.R’ [10s/10s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s/24s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs