context("(skip on CRAN for windows 32bit) Global VSURF test for classification iris data") platform <- sessionInfo()$platform is.win32b <- function(platform) { if (platform == "i386-w64-mingw32/i386 (32-bit)") { return(TRUE) } else { return(FALSE) } } set.seed(2219, kind = "Mersenne-Twister") data(iris) iris.vsurf <- VSURF(iris[,1:4], iris[,5], ntree.thres = 100, ntree.interp = 500, ntree.pred = 500, nfor.thres = 20, nfor.interp = 10, nfor.pred = 10, verbose = FALSE) test_that("Selected variables for the 3 steps", { if (is.win32b(platform)) { skip_on_cran() skip_on_appveyor()} expect_identical(iris.vsurf$varselect.thres, c(4L, 3L, 1L, 2L)) expect_identical(iris.vsurf$varselect.interp, c(4L, 3L)) expect_identical(iris.vsurf$varselect.pred, c(4L, 3L)) }) test_that("Variable importance",{ if (is.win32b(platform)) { skip_on_cran() skip_on_appveyor()} expect_equal(iris.vsurf$imp.mean.dec, c(0.26514650, 0.26355895, 0.08523059, 0.03936667), tolerance = 1e-7) expect_equal(iris.vsurf$imp.sd.dec, c(0.014059314, 0.013751759, 0.009897334, 0.006062447), tolerance = 1e-7) expect_identical(iris.vsurf$imp.mean.dec.ind, c(4L, 3L, 1L, 2L)) }) test_that("OOB erros of nested models", { if (is.win32b(platform)) { skip_on_cran() skip_on_appveyor()} expect_equal(iris.vsurf$err.interp, c(0.04666667, 0.03866667, 0.05000000, 0.04466667), tolerance = 1e-7) expect_equal(iris.vsurf$err.pred, c(0.04666667, 0.03600000), tolerance = 1e-7) }) test_that("Thresholds for the 3 steps", { if (is.win32b(platform)) { skip_on_cran() skip_on_appveyor()} expect_equal(min(iris.vsurf$pred.pruned.tree), 0.006062447, tolerance = 1e-7) expect_equal(iris.vsurf$sd.min, 0.005258738, tolerance = 1e-7) expect_equal(iris.vsurf$mean.jump, 0.008333333, tolerance = 1e-7) })