.proctime00 <- proc.time() require(VLMC) ## Currently, there's also an extensive AIC example in ## ../man/OZrain.Rd, i.e. example(OZrain) data(bnrf1) tit <- paste("VLMC for BNRF1 Epstein-Barr, N =", length(bnrf1EB)) N <- length(bnrf1EB) nC <- length(cutoffs <- c(seq(2,6, by = .125), seq(6.5, 10, by = 0.5), seq(11, 15, by = 1))) ABIC.EB <- matrix(NA, 2, nC, dimnames = list(c("AIC", "BIC"), NULL)) sizes.EB <- matrix(NA, 4, nC) for(ic in 1:nC) { cuto <- cutoffs[ic] v <- vlmc(bnrf1EB, cutoff = cuto) ABIC.EB [, ic] <- AIC(v, k = c(2, log(N))) sizes.EB[, ic] <- v$size } rownames(sizes.EB) <- names(v$size) ## Hmm... BIC seems completely off ## Table cbind(cutoff = cutoffs, t(ABIC.EB), t(sizes.EB)) if(!dev.interactive(orNone=TRUE)) pdf("AIC-etc.pdf") par(mfrow = c(2,1), mgp = c(1.5, .6, 0), mar = .1 + c(4,3,3,1)) plot(cutoffs, ABIC.EB[1,], type = "o", main = paste("AIC of", tit), log = 'xy', sub = paste("qchisq(0.95, 4 -1) / 2 = ",format(qchisq(0.95, 3) / 2))) plot(cutoffs, ABIC.EB[2,], type = "o", main = paste("BIC of", tit), log = 'xy') ## Last Line: cat('Time elapsed: ', proc.time() - .proctime00,'\n')