* using log directory 'd:/RCompile/CRANincoming/R-devel/VIMPS.Rcheck'
* using R Under development (unstable) (2023-09-25 r85222 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'VIMPS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'VIMPS' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Meredith Wallace <lotzmj@upmc.edu>'

New submission

Non-FOSS package license (What license is it under?)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'VIMPS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  What license is it under?
Standardizable: FALSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' imports not declared from:
  'ROCR' 'caret' 'ggplot2' 'knockoff' 'ranger'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
calc_dom_prob: no visible global function definition for 'write.table'
calc_ko_prob: no visible global function definition for 'read.csv'
calc_ko_prob: no visible global function definition for 'write.table'
calc_metrics: no visible global function definition for 'read.csv'
calc_metrics: no visible global function definition for 'write.csv'
gen_ko: no visible global function definition for 'write.table'
graph_results: no visible binding for global variable 'importance'
graph_results: no visible global function definition for 'reorder'
graph_results: no visible binding for global variable 'variable'
normal_model: no visible global function definition for 'as.formula'
normal_model: no visible global function definition for 'predict'
one_tree_model: no visible global function definition for 'as.formula'
one_tree_model: no visible global function definition for 'predict'
Undefined global functions or variables:
  as.formula importance predict read.csv reorder variable write.csv
  write.table
Consider adding
  importFrom("stats", "as.formula", "predict", "reorder")
  importFrom("utils", "read.csv", "write.csv", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'calc_vimps'
  'model_all' 'model_subset'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [16s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs