Package: catdata Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘altbin-teratology.Rnw’ using knitr --- finished re-building ‘altbin-teratology.Rnw’ --- re-building ‘binary-unemployment.Rnw’ using knitr --- finished re-building ‘binary-unemployment.Rnw’ --- re-building ‘binary-vaso.Rnw’ using knitr --- finished re-building ‘binary-vaso.Rnw’ --- re-building ‘count-children.Rnw’ using knitr --- finished re-building ‘count-children.Rnw’ --- re-building ‘count-encephalitis.Rnw’ using knitr --- finished re-building ‘count-encephalitis.Rnw’ --- re-building ‘count-insolvency.Rnw’ using knitr --- finished re-building ‘count-insolvency.Rnw’ --- re-building ‘count-medcare.Rnw’ using knitr --- finished re-building ‘count-medcare.Rnw’ --- re-building ‘loglinear-birth.Rnw’ using knitr --- finished re-building ‘loglinear-birth.Rnw’ --- re-building ‘loglinear-leukoplakia.Rnw’ using knitr --- finished re-building ‘loglinear-leukoplakia.Rnw’ --- re-building ‘modbin-dust.Rnw’ using knitr --- finished re-building ‘modbin-dust.Rnw’ --- re-building ‘modbin-foodstamp.Rnw’ using knitr --- finished re-building ‘modbin-foodstamp.Rnw’ --- re-building ‘modbin-unemployment1.Rnw’ using knitr --- finished re-building ‘modbin-unemployment1.Rnw’ --- re-building ‘modbin-unemployment2.Rnw’ using knitr --- finished re-building ‘modbin-unemployment2.Rnw’ --- re-building ‘multinomial-addiction1.Rnw’ using knitr --- finished re-building ‘multinomial-addiction1.Rnw’ --- re-building ‘multinomial-addiction2.Rnw’ using knitr --- finished re-building ‘multinomial-addiction2.Rnw’ --- re-building ‘multinomial-party1.Rnw’ using knitr --- finished re-building ‘multinomial-party1.Rnw’ --- re-building ‘multinomial-party2.Rnw’ using knitr --- finished re-building ‘multinomial-party2.Rnw’ --- re-building ‘multinomial-travel.Rnw’ using knitr --- finished re-building ‘multinomial-travel.Rnw’ --- re-building ‘multivariate-birth1.Rnw’ using knitr --- finished re-building ‘multivariate-birth1.Rnw’ --- re-building ‘multivariate-birth2.Rnw’ using knitr --- finished re-building ‘multivariate-birth2.Rnw’ --- re-building ‘multivariate-knee.Rnw’ using knitr --- finished re-building ‘multivariate-knee.Rnw’ --- re-building ‘ordinal-arthritis.Rnw’ using knitr --- finished re-building ‘ordinal-arthritis.Rnw’ --- re-building ‘ordinal-knee1.Rnw’ using knitr --- finished re-building ‘ordinal-knee1.Rnw’ --- re-building ‘ordinal-knee2.Rnw’ using knitr --- finished re-building ‘ordinal-knee2.Rnw’ --- re-building ‘ordinal-retinopathy1.Rnw’ using knitr --- finished re-building ‘ordinal-retinopathy1.Rnw’ --- re-building ‘ordinal-retinopathy2.Rnw’ using knitr Quitting from ordinal-retinopathy2.Rnw:40-44 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `get()`: ! object 'logit' not found --- Backtrace: x 1. +-VGAM::vglm(...) 2. \-VGAM::sratio(link = "logit", parallel = FALSE) 3. \-VGAM::link2list(link) 4. +-base::as.list(as.function(get(fun.name))) 5. +-base::as.function(get(fun.name)) 6. \-base::get(fun.name) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ordinal-retinopathy2.Rnw' failed with diagnostics: object 'logit' not found --- failed re-building ‘ordinal-retinopathy2.Rnw’ --- re-building ‘prediction-medcare.Rnw’ using knitr --- finished re-building ‘prediction-medcare.Rnw’ --- re-building ‘random-aids.Rnw’ using knitr --- finished re-building ‘random-aids.Rnw’ --- re-building ‘random-betablocker.Rnw’ using knitr --- finished re-building ‘random-betablocker.Rnw’ --- re-building ‘random-knee1.Rnw’ using knitr --- finished re-building ‘random-knee1.Rnw’ --- re-building ‘random-knee2.Rnw’ using knitr --- finished re-building ‘random-knee2.Rnw’ --- re-building ‘random-knee3.Rnw’ using knitr --- finished re-building ‘random-knee3.Rnw’ --- re-building ‘semiparametric-addiction.Rnw’ using knitr --- finished re-building ‘semiparametric-addiction.Rnw’ --- re-building ‘semiparametric-children.Rnw’ using knitr --- finished re-building ‘semiparametric-children.Rnw’ --- re-building ‘semiparametric-dust.Rnw’ using knitr --- finished re-building ‘semiparametric-dust.Rnw’ --- re-building ‘semiparametric-unemployment.Rnw’ using knitr --- finished re-building ‘semiparametric-unemployment.Rnw’ --- re-building ‘tree-dust.Rnw’ using knitr --- finished re-building ‘tree-dust.Rnw’ --- re-building ‘tree-unemployment.Rnw’ using knitr --- finished re-building ‘tree-unemployment.Rnw’ SUMMARY: processing the following file failed: ‘ordinal-retinopathy2.Rnw’ Error: Vignette re-building failed. Execution halted Package: Countr Check: whether package can be installed New result: ERROR Installation failed. Package: sampleSelection Check: tests New result: NOTE Running ‘Mroz87SelectionTest.R’ [2s/2s] Comparing ‘Mroz87SelectionTest.Rout’ to ‘Mroz87SelectionTest.Rout.save’ ... OK Running ‘binarySelectionOutcome.R’ [7s/7s] Comparing ‘binarySelectionOutcome.Rout’ to ‘binarySelectionOutcome.Rout.save’ ... OK Running ‘fail.R’ [1s/1s] Comparing ‘fail.Rout’ to ‘fail.Rout.save’ ... OK Running ‘heckitIvTest.R’ [1s/1s] Comparing ‘heckitIvTest.Rout’ to ‘heckitIvTest.Rout.save’ ... OK Running ‘intervalTest.R’ [9s/9s] Comparing ‘intervalTest.Rout’ to ‘intervalTest.Rout.save’ ... OK Running ‘invMillsRatioTest.R’ [9s/9s] Comparing ‘invMillsRatioTest.Rout’ to ‘invMillsRatioTest.Rout.save’ ...30a31,37 > > Attaching package: 'VGAM' > > The following object is masked from 'package:sampleSelection': > > probit > 75a83,84 > > No Hauck-Donner effect found in any of the estimates Running ‘probit.R’ [2s/2s] Comparing ‘probit.Rout’ to ‘probit.Rout.save’ ... OK Running ‘selection.R’ [6s/6s] Comparing ‘selection.Rout’ to ‘selection.Rout.save’ ... OK Package: VGAMextra Check: whether package can be installed New result: ERROR Installation failed.