* using log directory ‘/srv/hornik/tmp/CRAN_pretest/VGAM.Rcheck’
* using R Under development (unstable) (2024-09-15 r87152)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘VGAM/DESCRIPTION’ ... OK
* this is package ‘VGAM’ version ‘1.1-12’
* checking CRAN incoming feasibility ... [9s/12s] Note_to_CRAN_maintainers
Maintainer: ‘Thomas Yee <t.yee@auckland.ac.nz>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘VGAM’ can be installed ... [46s/45s] OK
* used C compiler: ‘Debian clang version 18.1.8 (11)’
* used Fortran compiler: ‘Debian flang-new version 18.1.8 (11)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [91s/91s] OK
* checking Rd files ... [3s/3s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... WARNING
Missing link or links in Rd file 'amlbinomial.Rd':
  ‘[VGAMdata]{alaplace1}’

Missing link or links in Rd file 'amlexponential.Rd':
  ‘[VGAMdata]{alaplace1}’

Missing link or links in Rd file 'amlnormal.Rd':
  ‘[VGAMdata]{alaplace1}’

Missing link or links in Rd file 'amlpoisson.Rd':
  ‘[VGAMdata]{alaplace1}’

Missing link or links in Rd file 'exponential.Rd':
  ‘[VGAMdata]{laplace}’

Missing link or links in Rd file 'extlogF.UC.Rd':
  ‘[VGAMdata]{dalap}’

Missing link or links in Rd file 'extlogF1.Rd':
  ‘[VGAMdata]{alaplace1}’ ‘[VGAMdata]{dalap}’

Missing link or links in Rd file 'grc.Rd':
  ‘[VGAMdata]{alaplace2}’

Missing link or links in Rd file 'huber.Rd':
  ‘[VGAMdata]{laplace}’

Missing link or links in Rd file 'lms.bcn.Rd':
  ‘[VGAMdata]{alaplace1}’

Missing link or links in Rd file 'simulate.vlm.Rd':
  ‘[VGAMdata]{alaplace1}’ ‘[VGAMdata]{alaplace2}’
  ‘[VGAMdata]{triangle}’

Missing link or links in Rd file 'topple.Rd':
  ‘[VGAMdata]{Triangle}’

Missing link or links in Rd file 'toppleUC.Rd':
  ‘[VGAMdata]{Triangle}’

Missing link or links in Rd file 'wald.stat.Rd':
  ‘[VGAMdata]{alaplace1}’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking examples ... [77s/77s] OK
* checking PDF version of manual ... [23s/23s] OK
* checking HTML version of manual ... [22s/21s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING