RUNIT TEST PROTOCOL--Thu Jan 18 11:34:46 2024

Number of test functions: 176

Number of errors: 0

Number of failures: 3

1 Test suite

Failures

Details

Test Suite: VCA

• Test file: runit.VCAinference.R
  • TF001.VCAinference.constrained_CIs.balanced: (6 checks) ... OK (0.95 seconds)
    
  • TF002.VCAinference.unconstrained_CIs.balanced: (6 checks) ... OK (1.23 seconds)
    
  • TF003.VCAinference.negative_VC.balanced: (4 checks) ... OK (1.14 seconds)
    
  • TF004.VCAinference.VC_CI.balanced: (6 checks) ... OK (1.21 seconds)
    
  • TF005.VCAinference.WinCAEv_PrecPerf.SD_CI: (2 checks) ... OK (0.43 seconds)
    
  • TF006.VCAinference.WinCAEv_PrecPerf.SD_CI: (2 checks) ... OK (0.39 seconds)
    
  • TF007.VCAinference.CrossedNested.VC_CI.balanced: (5 checks) ... OK (0.33 seconds)
    
  • TF008.VCAinference.CrossedNested.VC_CI.unbalanced: (1 checks) ... OK (0.32 seconds)
    
  • TF009.VCAinference.CrossedNested.VC_CI.balanced: (5 checks) ... OK (0.31 seconds)
    
  • TF010.VCAinference.CrossedNested.VC_CI.unbalanced: (1 checks) ... OK (0.29 seconds)
    
  • TF011.VCAinference.CrossedNested.VC_CI.balanced: (5 checks) ... OK (0.35 seconds)
    
  • TF012.VCAinference.CrossedNested.VC_CI.unbalanced: (1 checks) ... OK (0.33 seconds)
    
  • TF013.anovaVCA.Satt_methodology_for_CI.balanced: (2 checks) ... OK (0.34 seconds)
    
  • TF014.anovaVCA.Satt_methodology_for_CI.balanced: (2 checks) ... OK (0.27 seconds)
    
  • TF015.anovaMM.Satt_methodology.balanced: (2 checks) ... OK (0.17 seconds)
    
  • TF016.anovaMM.Satt_methodology.balanced: (2 checks) ... OK (0.17 seconds)
    
  • TF017.anovaVCA.Est_outsided_CI: (4 checks) ... OK (0.31 seconds)
    
  • TF018.VCAinference.constrained_CIs.balanced: (6 checks) ... OK (0.41 seconds)
    
  • TF019.VCAinference.unconstrained_CIs.balanced: (4 checks) ... OK (0.23 seconds)
    
  • TF020.VCAinference.balanced.REML.satterthwaite: (4 checks) ... OK (0.21 seconds)
    
  • TF021.VCAinference.VC_CI.balanced.REML: (6 checks) ... OK (0.2 seconds)
    
• Test file: runit.anovaMM.R
  • TF001.anovaMM.balanced1: (2 checks) ... OK (0.23 seconds)
    
  • TF002.anovaMM.NegVC.balanced: (2 checks) ... OK (0.89 seconds)
    
  • TF003.anovaMM.NegVC.unbalanced: (2 checks) ... OK (0.89 seconds)
    
  • TF004.anovaMM.ProcMixed.balanced1: (2 checks) ... OK (0.15 seconds)
    
  • TF005.anovaMM.ProcMixed.unbalanced1: (2 checks) ... OK (0.16 seconds)
    
  • TF006.anovaDF.balanced: (1 checks) ... OK (0.17 seconds)
    
  • TF007.anovaDF.unbalanced: (1 checks) ... OK (0.21 seconds)
    
  • TF008.anovaDF.balanced: (1 checks) ... OK (0.18 seconds)
    
  • TF009.anovaDF.unbalanced: (1 checks) ... OK (0.28 seconds)
    
  • TF010.anovaMM.exception_handling: (6 checks) ... OK (0.02 seconds)
    
  • TF011.anovaMM.SD_results: (3 checks) ... OK (0.73 seconds)
    
  • TF012.anovaMM.CV_perc_results: (3 checks) ... OK (0.52 seconds)
    
  • TF013.anovaMM.Percent_Total_results: (3 checks) ... OK (0.48 seconds)
    
  • TF014.anovaMM.missing_value_handling: (4 checks) ... OK (0.35 seconds)
    
  • TF015.anovaMM.sleepstudy: (1 checks) ... OK (0.17 seconds)
    
  • TF016.anovaMM.error.chol2inv: (1 checks) ... OK (0.19 seconds)
    
  • TF017.anovaMM.zeroVariance: (3 checks) ... OK (0.48 seconds)
    
  • TF018.anovaMM.byProcessing: (2 checks) ... OK (0.46 seconds)
    
• Test file: runit.anovaVCA.R
  • TF001.anovaVCA.exception: (6 checks) ... OK (0 seconds)
    
  • TF002.anovaVCA.EP05_A2_intermediate_precision.balanced: (3 checks) ... OK (1.06 seconds)
    
  • TF003.anovaVCA.EP05_A2_intermediate_precision.unbalanced: (3 checks) ... OK (0.91 seconds)
    
  • TF004.anovaVCA.SD_results: (3 checks) ... OK (1 seconds)
    
  • TF005.anovaVCA.CV_perc_results: (3 checks) ... OK (0.89 seconds)
    
  • TF006.anovaVCA.Percent_Total_results: (3 checks) ... OK (0.92 seconds)
    
  • TF007.anovaVCA.EP05_A3_Reproducibility.balanced: (3 checks) ... OK (0.94 seconds)
    
  • TF008.anovaVCA.EP05_A3_Reproducibility.unbalanced: (3 checks) ... OK (1.06 seconds)
    
  • TF009.anovaVCA.WRI: (3 checks) ... OK (1.07 seconds)
    
  • TF010.anovaVCA.BDI.external_labs.balanced: (3 checks) ... OK (0.95 seconds)
    
  • TF011.anovaVCA.BDI.external_labs.unbalanced: (3 checks) ... OK (1.06 seconds)
    
  • TF012.anovaVCA.variable_conversion: (1 checks) ... OK (0.95 seconds)
    
  • TF013.anovaVCA.missing_value_handling: (4 checks) ... OK (0.61 seconds)
    
  • TF014.anovaVCA.crossed_nested.balanced: (5 checks) ... OK (0.33 seconds)
    
  • TF015.anovaVCA.crossed_nested.unbalanced: (5 checks) ... OK (0.31 seconds)
    
  • TF016.anovaVCA.crossed_nested.balanced: (5 checks) ... OK (0.43 seconds)
    
  • TF017.anovaVCA.crossed_nested.unbalanced: (5 checks) ... OK (0.32 seconds)
    
  • TF018.anovaDF.balanced: (1 checks) ... OK (0.29 seconds)
    
  • TF019.anovaDF.unbalanced: (1 checks) ... OK (0.28 seconds)
    
  • TF020.anovaDF.balanced: (1 checks) ... OK (0.29 seconds)
    
  • TF021.anovaDF.unbalanced: (1 checks) ... OK (0.32 seconds)
    
  • TF022.anovaDF.balanced: (1 checks) ... OK (0.36 seconds)
    
  • TF023.anovaDF.unbalanced: (1 checks) ... OK (0.42 seconds)
    
  • TF024.anovaDF.balanced: (1 checks) ... OK (0.31 seconds)
    
  • TF025.anovaDF.unbalanced: (1 checks) ... OK (0.34 seconds)
    
  • TF026.anovaDF.balanced.ordering: (2 checks) ... OK (0.64 seconds)
    
  • TF027.check.sweep_vs_SAS_computation: (1 checks) ... OK (0.44 seconds)
    
  • TF034.anovaVCA.zeroVariance: (2 checks) ... OK (0.58 seconds)
    
  • TF035.anovaVCA.MisspecifiedModel: (1 checks) ... OK (0.02 seconds)
    
  • TF036.anovaVCA.byProcessing: (2 checks) ... OK (0.71 seconds)
    
• Test file: runit.misc.R
  • TF001.CovarianceMatrix: (5 checks) ... OK (0.31 seconds)
    
  • TF002.marginal_residuals: (3 checks) ... OK (0.19 seconds)
    
  • TF003.conditional_residuals: (3 checks) ... OK (0.17 seconds)
    
  • TF004.ddfm.LMM.unbalanced: (3 checks) ... OK (0.32 seconds)
    
  • TF005.ddfm.LMM.unbalanced: (3 checks) ... OK (0.34 seconds)
    
  • TF006.stepwiseVCA.fully_nested: (6 checks) ... OK (0.3 seconds)
    
  • TF007.getL.simple_contrasts: (2 checks) ... OK (0.23 seconds)
    
  • TF008.getL.complex_contrasts: (1 checks) ... OK (0.28 seconds)
    
  • TF009.getL.complex_contrasts: (1 checks) ... OK (0.27 seconds)
    
  • TF010.ranef.balanced.nested: (1 checks) ... OK (0.29 seconds)
    
  • TF011.ranef.balanced.nested: (1 checks) ... OK (0.3 seconds)
    
  • TF012.ranef.balanced.nested: (1 checks) ... OK (0.29 seconds)
    
  • TF013.ranef.unbalanced.nested: (1 checks) ... OK (0.28 seconds)
    
  • TF014.ranef.unbalanced.nested: (1 checks) ... OK (0.3 seconds)
    
  • TF015.ranef.unbalanced.nested: (1 checks) ... OK (0.3 seconds)
    
  • TF016.as.matrix.anovaVCA: (1 checks) ... OK (0.3 seconds)
    
  • TF017.as.matrix.anovaMM: (1 checks) ... OK (0.17 seconds)
    
  • TF018.SattDF_total_vs_Neter_Wasserman: (1 checks) ... OK (0.28 seconds)
    
  • TF019.SattDF_total_vs_Neter_Wasserman: (1 checks) ... OK (0.34 seconds)
    
  • TF020.SattDF_total_vs_Neter_Wasserman: (1 checks) ... OK (0.33 seconds)
    
  • TF021.lsmeans.balanced: (4 checks) ... OK (0.22 seconds)
    
  • TF022.lsmeans.unbalanced: (2 checks) ... OK (0.19 seconds)
    
  • TF023.ddfm_fixef.all_methods.Orthodont.balanced: (3 checks) ... OK (0.18 seconds)
    
  • TF024.ddfm_lsmeans.all_methods.Orthodont.unbalanced: (3 checks) ... OK (0.24 seconds)
    
  • TF025.lsmeans.including_covariate: (1 checks) ... OK (0.22 seconds)
    
  • TF026.lsmeans.complex_model.including_covariate: (1 checks) ... OK (0.28 seconds)
    
  • TF027.anovaVCA.by_processing: (6 checks) ... OK (3.89 seconds)
    
  • TF028.anovaMM.by_processing: (6 checks) ... OK (1.94 seconds)
    
  • TF029.anovaVCA.by_processing: (12 checks) ... OK (4.23 seconds)
    
  • TF030.anovaVCA.by_processing: (6 checks) ... OK (3.59 seconds)
    
  • TF031.test.lsmeans: (1 checks) ... OK (0.24 seconds)
    
  • TF032.ANOVA_vs_REML.residuals.raw: (4 checks) ... OK (1.39 seconds)
    
  • TF033.ANOVA_vs_REML.residuals.studentized: (4 checks) ... OK (1.45 seconds)
    
  • TF034.ANOVA_vs_REML.residuals.pearson: (4 checks) ... OK (1.6 seconds)
    
  • TF035.ANOVA_vs_REML.residuals.standardized: (4 checks) ... OK (1.43 seconds)
    
  • TF036.ANOVA_vs_REML.ranef.raw: (4 checks) ... OK (1.47 seconds)
    
  • TF037.ANOVA_vs_REML.ranef.studentized: (4 checks) ... OK (1.6 seconds)
    
  • TF038.ANOVA_vs_REML.ranef.standardized: (4 checks) ... OK (1.42 seconds)
    
  • TF039.remlVCA.by_processing: (12 checks) ... OK (1.03 seconds)
    
  • TF040.remlMM.by_processing: (12 checks) ... OK (0.87 seconds)
    
  • TF041.REML.test.lsmeans: (1 checks) ... OK (0.11 seconds)
    
  • TF042.balancedness.ordered_vs_unordered: (4 checks) ... OK (0.97 seconds)
    
  • TF043.LSMeans.atCovarLevel: FAILURE !! (check number 1) Error in checkEquals(as.numeric(round(lsm[-c(1, 2), "Estimate"], 2)), : Numeric: lengths (0, 8) differ
    
  • TF044.LSMeans.atCovarLevel: FAILURE !! (check number 1) Error in checkEquals(nrow(lsm), 2) : Mean relative difference: 1
    
  • TF045.LSMeans.atCovarLevel: FAILURE !! (check number 1) Error in checkEquals(nrow(lsm1), 2) : Mean relative difference: 1
    
  • TF046.model.terms: (6 checks) ... OK (1.15 seconds)
    
  • TF047.as.matrix.VCA.REML: (12 checks) ... OK (0.25 seconds)
    
  • TF048.as.matrix.VCAinference.REML: (18 checks) ... OK (0.16 seconds)
    
  • TF049.as.matrix.VCAinference.ANOVA: (30 checks) ... OK (0.39 seconds)
    
  • TF050.lmerSummary: (4 checks) ... OK (0.47 seconds)
    
  • TF051.Scale.reScale.anovaVCA: (20 checks) ... OK (7.58 seconds)
    
  • TF052.Scale.reScale.anovaMM: (20 checks) ... OK (4.39 seconds)
    
  • TF053.Scale.reScale.remlVCA: (20 checks) ... OK (7.22 seconds)
    
  • TF054.Scale.reScale.remlMM: (20 checks) ... OK (7.29 seconds)
    
  • TF055.fitVCA.anovaVCA.remlVCA: (20 checks) ... OK (15.21 seconds)
    
  • TF056.orderData.remlVCA: (1 checks) ... OK (4 seconds)
    
  • TF057.orderData.remlMM: (1 checks) ... OK (3.9 seconds)
    
  • TF058.predict.anovaMM: (1 checks) ... OK (0.35 seconds)
    
  • TF059.predict.remlMM.newdata: (1 checks) ... OK (0.14 seconds)
    
  • TF060.predict.remlMM.newdata: (1 checks) ... OK (0.08 seconds)
    
  • TF061.predict.remlMM.restriction: (1 checks) ... OK (0.1 seconds)
    
  • TF062.comparison.fitLMM.REML: (1 checks) ... OK (0.17 seconds)
    
  • TF063.comparison.fitLMM.ANOVA: (1 checks) ... OK (0.37 seconds)
    
  • TF064.Scale.reScale.response: (1 checks) ... OK (0.47 seconds)
    
  • TF065.comparison.fitVCA.REML: (1 checks) ... OK (0.2 seconds)
    
  • TF066.comparison.fitVCA.ANOVA: (1 checks) ... OK (0.71 seconds)
    
  • TF067.checkException.NoReScaling: (2 checks) ... OK (0.31 seconds)
    
  • TF068.check.Scale.reScale.anovaVCA: (10 checks) ... OK (1.38 seconds)
    
  • TF069.check.Scale.reScale.remlVCA: (10 checks) ... OK (1.12 seconds)
    
  • TF070.check.Scale.reScale.anovaMM: (10 checks) ... OK (0.72 seconds)
    
  • TF071.check.Scale.reScale.remlMM: (10 checks) ... OK (0.74 seconds)
    
  • TF072.getMM.multi.covariables: (2 checks) ... OK (0.01 seconds)
    
  • TF073.fitVCA_ANOVA_VarVC_TRUE: (1 checks) ... OK (0.68 seconds)
    
  • TF074.fitVCA_REML_VarVC_TRUE: (1 checks) ... OK (0.17 seconds)
    
  • TF075.protectedCall.anovaVCA: (1 checks) ... OK (0.01 seconds)
    
  • TF076.protectedCall.remlVCA: (1 checks) ... OK (0.21 seconds)
    
  • TF077.protectedCall.remlMM: (1 checks) ... OK (0.17 seconds)
    
  • TF078.protectedCall.anovaMM: (1 checks) ... OK (0.01 seconds)
    
  • TF079.protectedCall.fitVCA.anova: (1 checks) ... OK (0.04 seconds)
    
  • TF080.protectedCall.fitVCA.reml: (1 checks) ... OK (0.15 seconds)
    
  • TF081.protectedCall.fitLMM.anova: (1 checks) ... OK (0.03 seconds)
    
  • TF082.protectedCall.fitLMM.reml: (1 checks) ... OK (0.14 seconds)
    
• Test file: runit.remlMM.R
  • TF001.anovaVCA_vs_remlMM: (2 checks) ... OK (0.36 seconds)
    
  • TF002.anovaMM.balanced1: (2 checks) ... OK (0.21 seconds)
    
  • TF003.anovaMM.NegVC.balanced: (1 checks) ... OK (0.22 seconds)
    
  • TF004.anovaMM.ProcMixed.balanced1: (2 checks) ... OK (0.11 seconds)
    
  • TF005.anova_vs_reml.balanced: (4 checks) ... OK (0.57 seconds)
    
  • TF006.anova_vs_reml.balanced: (2 checks) ... OK (0.28 seconds)
    
  • TF007.anova_vs_reml.regression.balanced: (4 checks) ... OK (0.25 seconds)
    
  • TF008.remlMM.exception_handling: (6 checks) ... OK (0.01 seconds)
    
  • TF009.remlMM.Percent_Total_results: (3 checks) ... OK (0.31 seconds)
    
  • TF010.remlMM.regression.sleepstudy: (1 checks) ... OK (0.1 seconds)
    
  • TF011.remlMM.zeroVariance: (3 checks) ... OK (0.33 seconds)
    
  • TF012.remlMM.byProcessing: (2 checks) ... OK (0.12 seconds)
    
• Test file: runit.remlVCA.R
  • TF001.remlVCA.exception: (6 checks) ... OK (0 seconds)
    
  • TF002.remlVCA.EP05_A2_intermediate_precision.balanced: (6 checks) ... OK (1.64 seconds)
    
  • TF003.remlVCA.EP05_A2_intermediate_precision.unbalanced: (3 checks) ... OK (0.31 seconds)
    
  • TF004.remlVCA.EP05_A3_Reproducibility.balanced: (3 checks) ... OK (0.21 seconds)
    
  • TF005.remlVCA.WRI: (3 checks) ... OK (0.92 seconds)
    
  • TF006.remlVCA.BDI.external_labs.balanced: (3 checks) ... OK (0.15 seconds)
    
  • TF007.remlVCA.crossed_nested.balanced: (5 checks) ... OK (0.49 seconds)
    
  • TF008.remlVCA.crossed_nested.balanced: (5 checks) ... OK (0.37 seconds)
    
  • TF009.remlVCA.zeroVariance: (2 checks) ... OK (0.19 seconds)
    
  • TF010.remlVCA.byProcessing: (2 checks) ... OK (0.13 seconds)
    
  • TF011.remlVCA.VCAinference: (1 checks) ... OK (0.11 seconds)
    
  • TF012.remlVCA.VCAinference: (24 checks) ... OK (0.21 seconds)
    
  • TF013.remlVCA.VCAinference: (1 checks) ... OK (0.11 seconds)