* using log directory 'd:/RCompile/CRANincoming/R-devel/VCA.Rcheck'
* using R Under development (unstable) (2024-01-07 r85787 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'VCA/DESCRIPTION' ... OK
* this is package 'VCA' version '1.4.6'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>'

Package has a VignetteBuilder field but no prebuilt vignette index.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'VCA' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 12.3.0'
* used Fortran compiler: 'GNU Fortran (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s] OK
* checking Rd files ... NOTE
checkRd: (-1) Fsweep.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fsweep.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fsweep.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fsweep.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fsweep.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fsweep.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fsweep.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fsweep.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VCAinference.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VCAinference.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VCAinference.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) anovaMM.Rd:59: Lost braces; missing escapes or markup?
    59 | A Linear Mixed Model, noted in standard matrix notation, can be written as {y = Xb + Zg + e}, where
       |                                                                            ^
checkRd: (-1) getSSQsweep.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getSSQsweep.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [103s] OK
  Running 'RunAllTests.R' [103s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [10s] OK
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [13s] OK
* DONE
Status: 2 NOTEs