* using log directory ‘/srv/hornik/tmp/CRAN/UrnModel.Rcheck’ * using R Under development (unstable) (2024-06-19 r86793) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.5 (2) Debian flang-new version 18.1.5 (2) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘UrnModel/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘UrnModel’ version ‘0.9.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Gage A. Pierce ’ New submission Possibly misspelled words in DESCRIPTION: ARO (15:476) Blau (15:53, 15:82, 15:687, 15:814) Brashears (15:708, 15:844, 15:968) HBSm (3:8) automata (15:150) orgs (15:334) Found the following (possibly) invalid URLs: URL: https://github.com/piercegagea/UrnModel From: DESCRIPTION Status: 404 Message: Not Found URL: https://github.com/piercegagea/UrnModel/issues From: DESCRIPTION Status: 404 Message: Not Found * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘UrnModel’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING 'library' or 'require' calls not declared from: ‘Matrix’ ‘beepr’ ‘cdfquantreg’ ‘stringr’ ‘truncnorm’ 'library' or 'require' calls in package code: ‘Matrix’ ‘beepr’ ‘cdfquantreg’ ‘stringr’ ‘truncnorm’ Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] NOTE HBSm: no visible binding for global variable ‘entities’ HBSm: no visible binding for global variable ‘OGorgs’ HBSm: no visible binding for global variable ‘nrange’ HBSm: no visible binding for global variable ‘limit’ HBSm: no visible binding for global variable ‘memory’ HBSm: no visible binding for global variable ‘prev_orgs’ HBSm: no visible binding for global variable ‘checrun’ HBSm: no visible binding for global variable ‘convrange’ HBSm: no visible global function definition for ‘str_remove’ HBSm: no visible binding for global variable ‘tolerance’ HBSm: no visible binding for global variable ‘maxrun’ HBSm: no visible binding for global variable ‘Binary’ HBSm: no visible binding for global variable ‘globrun’ HBSm: no visible binding for global variable ‘totindi’ HBSm: no visible global function definition for ‘etruncnorm’ HBSm: no visible global function definition for ‘vtruncnorm’ HBSm: no visible binding for global variable ‘mainDir’ HBSm: no visible binding for global variable ‘Exploitation_GOF_SD’ HBSm: no visible binding for global variable ‘demoraphics’ HBSm: no visible binding for global variable ‘Importdat’ HBSm: no visible binding for global variable ‘.’ HBSm: no visible global function definition for ‘beep’ Undefined global functions or variables: . Binary Exploitation_GOF_SD Importdat OGorgs beep checrun convrange demoraphics entities etruncnorm globrun limit mainDir maxrun memory nrange prev_orgs str_remove tolerance totindi vtruncnorm Found the following assignments to the global environment: File ‘UrnModel/R/HBSm.R’: assign("nDim", nDim, envir = .GlobalEnv) assign("globrun", glob, envir = .GlobalEnv) assign("limit", entities + 1, envir = .GlobalEnv) assign("mlc", 0, envir = .GlobalEnv) assign("errorcount", 0, envir = .GlobalEnv) assign("itde", 1, envir = .GlobalEnv) assign("checrun", chec, envir = .GlobalEnv) assign("maxrun", maxr, envir = .GlobalEnv) assign("tolerance", tol, envir = .GlobalEnv) assign("nrange", r, envir = .GlobalEnv) assign("convrange", convr, envir = .GlobalEnv) assign("memory", mem, envir = .GlobalEnv) assign("import", imp, envir = .GlobalEnv) assign("Binary", bin, envir = .GlobalEnv) assign("prefix", prefix, envir = .GlobalEnv) assign("year", year, envir = .GlobalEnv) assign("saveDir", saveDir, envir = .GlobalEnv) assign("notif", notif, envir = .GlobalEnv) assign("exploitMhist", exploitMhist, envir = .GlobalEnv) assign("WCChist", WCChist, envir = .GlobalEnv) assign("intencellhist", intencellhist, envir = .GlobalEnv) assign("intenranghist", intenranghist, envir = .GlobalEnv) assign("sumorghist", sumorghist, envir = .GlobalEnv) assign("orgs_x_minhist", orgs_x_minhist, envir = .GlobalEnv) assign("orgs_x_maxhist", orgs_x_maxhist, envir = .GlobalEnv) assign("orgs_y_minhist", orgs_y_minhist, envir = .GlobalEnv) assign("orgs_y_maxhist", orgs_y_maxhist, envir = .GlobalEnv) assign("orgs_z_minhist", orgs_z_minhist, envir = .GlobalEnv) assign("orgs_z_maxhist", orgs_z_maxhist, envir = .GlobalEnv) assign("orgs", orgs, envir = .GlobalEnv) assign("countlist", countlist, envir = .GlobalEnv) assign("locrun", locrun, envir = .GlobalEnv) assign("extenhist", extenhist, envir = .GlobalEnv) assign("coordpath", coordpath, envir = .GlobalEnv) assign("saveDir", saveDir, envir = .GlobalEnv) assign("orgs", orgs, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("changpos", changpos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("changneg", changneg, envir = .GlobalEnv) assign("skiptrip", skiptrip, envir = .GlobalEnv) assign("legrun", legrun, envir = .GlobalEnv) assign("oldupdate", oldupdate, envir = .GlobalEnv) assign("newupdate", newupdate, envir = .GlobalEnv) assign("TR", TR, envir = .GlobalEnv) assign("IT", IT, envir = .GlobalEnv) assign("mod_dim", mod_dim, envir = .GlobalEnv) assign("mod_dim", mod_dim, envir = .GlobalEnv) assign("cord_x", cord_x, envir = .GlobalEnv) assign("cord_y", cord_y, envir = .GlobalEnv) assign("cord_z", cord_z, envir = .GlobalEnv) assign("nbhcord_x_neg", nbhcord_x_neg, envir = .GlobalEnv) assign("nbhcord_x_pos", nbhcord_x_pos, envir = .GlobalEnv) assign("nbhcord_x_nrange", nbhcord_x_nrange, envir = .GlobalEnv) assign("nbhcord_y_neg", nbhcord_y_neg, envir = .GlobalEnv) assign("nbhcord_y_pos", nbhcord_y_pos, envir = .GlobalEnv) assign("nbhcord_y_nrange", nbhcord_y_nrange, envir = .GlobalEnv) assign("nbhcord_z_neg", nbhcord_z_neg, envir = .GlobalEnv) assign("nbhcord_z_pos", nbhcord_z_pos, envir = .GlobalEnv) assign("nbhcord_z_nrange", nbhcord_z_nrange, envir = .GlobalEnv) assign("orgtemp", orgtemp, envir = .GlobalEnv) assign("focelist", focelist, envir = .GlobalEnv) assign("nbhlist", nbhlist, envir = .GlobalEnv) assign("oldorgtemp", oldorgtemp, envir = .GlobalEnv) assign("pre_focelist", pre_focelist, envir = .GlobalEnv) assign("pre_nbhlist", pre_nbhlist, envir = .GlobalEnv) assign("focsum", focsum, envir = .GlobalEnv) assign("nbhsum", nbhsum, envir = .GlobalEnv) assign("pre_focsum", pre_focsum, envir = .GlobalEnv) assign("pre_nbhsum", pre_nbhsum, envir = .GlobalEnv) assign("totchange", totchange, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Prob_org", Prob_org, envir = .GlobalEnv) assign("Probmax", Probmax, envir = .GlobalEnv) assign("probrang", probrang, envir = .GlobalEnv) assign("adj", adj, envir = .GlobalEnv) assign("mintemp", mintemp, envir = .GlobalEnv) assign("loctemp", loctemp, envir = .GlobalEnv) assign("stolsum", stolsum, envir = .GlobalEnv) assign("probtest", probtest, envir = .GlobalEnv) assign("stolist", stolist, envir = .GlobalEnv) assign("ctempval", ctempval, envir = .GlobalEnv) assign("orgs", orgs, envir = .GlobalEnv) assign("tempsum", tempsum, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("temptot", temptot, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("totchange", totchange, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("tchange", tchange, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("orglist", orglist, envir = .GlobalEnv) assign("CR", CR, envir = .GlobalEnv) assign("temptest", temptest, envir = .GlobalEnv) assign("aveorgtemp3", aveorgtemp3, envir = .GlobalEnv) assign("aveorgtemp2", aveorgtemp2, envir = .GlobalEnv) assign("aveorgtemp", aveorgtemp, envir = .GlobalEnv) assign("leng", leng, envir = .GlobalEnv) assign("lenglim", lenglim, envir = .GlobalEnv) assign("converg", converg, envir = .GlobalEnv) assign("conversave", conversave, envir = .GlobalEnv) assign("convergcount", convergcount, envir = .GlobalEnv) assign("convnum", convnum, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("changpos", changpos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("changneg", changneg, envir = .GlobalEnv) assign("skiptrip", skiptrip, envir = .GlobalEnv) assign("legrun", legrun, envir = .GlobalEnv) assign("oldupdate", oldupdate, envir = .GlobalEnv) assign("newupdate", newupdate, envir = .GlobalEnv) assign("TR", TR, envir = .GlobalEnv) assign("IT", IT, envir = .GlobalEnv) assign("mod_dim", mod_dim, envir = .GlobalEnv) assign("mod_dim", mod_dim, envir = .GlobalEnv) assign("cord_x", cord_x, envir = .GlobalEnv) assign("cord_y", cord_y, envir = .GlobalEnv) assign("cord_z", cord_z, envir = .GlobalEnv) assign("nbhcord_x_neg", nbhcord_x_neg, envir = .GlobalEnv) assign("nbhcord_x_pos", nbhcord_x_pos, envir = .GlobalEnv) assign("nbhcord_x_nrange", nbhcord_x_nrange, envir = .GlobalEnv) assign("nbhcord_y_neg", nbhcord_y_neg, envir = .GlobalEnv) assign("nbhcord_y_pos", nbhcord_y_pos, envir = .GlobalEnv) assign("nbhcord_y_nrange", nbhcord_y_nrange, envir = .GlobalEnv) assign("nbhcord_z_neg", nbhcord_z_neg, envir = .GlobalEnv) assign("nbhcord_z_pos", nbhcord_z_pos, envir = .GlobalEnv) assign("nbhcord_z_nrange", nbhcord_z_nrange, envir = .GlobalEnv) assign("orgtemp", orgtemp, envir = .GlobalEnv) assign("focelist", focelist, envir = .GlobalEnv) assign("nbhlist", nbhlist, envir = .GlobalEnv) assign("oldorgtemp", oldorgtemp, envir = .GlobalEnv) assign("pre_focelist", pre_focelist, envir = .GlobalEnv) assign("pre_nbhlist", pre_nbhlist, envir = .GlobalEnv) assign("focsum", focsum, envir = .GlobalEnv) assign("nbhsum", nbhsum, envir = .GlobalEnv) assign("pre_focsum", pre_focsum, envir = .GlobalEnv) assign("pre_nbhsum", pre_nbhsum, envir = .GlobalEnv) assign("totchange", totchange, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Prob_org", Prob_org, envir = .GlobalEnv) assign("Probmax", Probmax, envir = .GlobalEnv) assign("probrang", probrang, envir = .GlobalEnv) assign("adj", adj, envir = .GlobalEnv) assign("mintemp", mintemp, envir = .GlobalEnv) assign("loctemp", loctemp, envir = .GlobalEnv) assign("stolsum", stolsum, envir = .GlobalEnv) assign("probtest", probtest, envir = .GlobalEnv) assign("stolist", stolist, envir = .GlobalEnv) assign("ctempval", ctempval, envir = .GlobalEnv) assign("orgs", orgs, envir = .GlobalEnv) assign("tempsum", tempsum, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("temptot", temptot, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("totchange", totchange, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("tchange", tchange, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("orglist", orglist, envir = .GlobalEnv) assign("CR", CR, envir = .GlobalEnv) assign("temptest", temptest, envir = .GlobalEnv) assign("aveorgtemp3", aveorgtemp3, envir = .GlobalEnv) assign("aveorgtemp2", aveorgtemp2, envir = .GlobalEnv) assign("aveorgtemp", aveorgtemp, envir = .GlobalEnv) assign("leng", leng, envir = .GlobalEnv) assign("lenglim", lenglim, envir = .GlobalEnv) assign("converg", converg, envir = .GlobalEnv) assign("conversave", conversave, envir = .GlobalEnv) assign("convergcount", convergcount, envir = .GlobalEnv) assign("convnum", convnum, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("changpos", changpos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("changneg", changneg, envir = .GlobalEnv) assign("skiptrip", skiptrip, envir = .GlobalEnv) assign("legrun", legrun, envir = .GlobalEnv) assign("oldupdate", oldupdate, envir = .GlobalEnv) assign("newupdate", newupdate, envir = .GlobalEnv) assign("TR", TR, envir = .GlobalEnv) assign("IT", IT, envir = .GlobalEnv) assign("mod_dim", mod_dim, envir = .GlobalEnv) assign("mod_dim", mod_dim, envir = .GlobalEnv) assign("cord_x", cord_x, envir = .GlobalEnv) assign("cord_y", cord_y, envir = .GlobalEnv) assign("cord_z", cord_z, envir = .GlobalEnv) assign("nbhcord_x_neg", nbhcord_x_neg, envir = .GlobalEnv) assign("nbhcord_x_pos", nbhcord_x_pos, envir = .GlobalEnv) assign("nbhcord_x_nrange", nbhcord_x_nrange, envir = .GlobalEnv) assign("nbhcord_y_neg", nbhcord_y_neg, envir = .GlobalEnv) assign("nbhcord_y_pos", nbhcord_y_pos, envir = .GlobalEnv) assign("nbhcord_y_nrange", nbhcord_y_nrange, envir = .GlobalEnv) assign("nbhcord_z_neg", nbhcord_z_neg, envir = .GlobalEnv) assign("nbhcord_z_pos", nbhcord_z_pos, envir = .GlobalEnv) assign("nbhcord_z_nrange", nbhcord_z_nrange, envir = .GlobalEnv) assign("orgtemp", orgtemp, envir = .GlobalEnv) assign("focelist", focelist, envir = .GlobalEnv) assign("nbhlist", nbhlist, envir = .GlobalEnv) assign("oldorgtemp", oldorgtemp, envir = .GlobalEnv) assign("pre_focelist", pre_focelist, envir = .GlobalEnv) assign("pre_nbhlist", pre_nbhlist, envir = .GlobalEnv) assign("focsum", focsum, envir = .GlobalEnv) assign("nbhsum", nbhsum, envir = .GlobalEnv) assign("pre_focsum", pre_focsum, envir = .GlobalEnv) assign("pre_nbhsum", pre_nbhsum, envir = .GlobalEnv) assign("totchange", totchange, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Prob_org", Prob_org, envir = .GlobalEnv) assign("Probmax", Probmax, envir = .GlobalEnv) assign("probrang", probrang, envir = .GlobalEnv) assign("adj", adj, envir = .GlobalEnv) assign("mintemp", mintemp, envir = .GlobalEnv) assign("loctemp", loctemp, envir = .GlobalEnv) assign("stolsum", stolsum, envir = .GlobalEnv) assign("probtest", probtest, envir = .GlobalEnv) assign("stolist", stolist, envir = .GlobalEnv) assign("ctempval", ctempval, envir = .GlobalEnv) assign("orgs", orgs, envir = .GlobalEnv) assign("tempsum", tempsum, envir = .GlobalEnv) assign("sumorgs", sumorgs, envir = .GlobalEnv) assign("temptot", temptot, envir = .GlobalEnv) assign("totpops", totpops, envir = .GlobalEnv) assign("totchange", totchange, envir = .GlobalEnv) assign("orgscoord", orgscoord, envir = .GlobalEnv) assign("Change", Change, envir = .GlobalEnv) assign("Coord", Coord, envir = .GlobalEnv) assign("tchange", tchange, envir = .GlobalEnv) assign("Changepos", Changepos, envir = .GlobalEnv) assign("Changeneg", Changeneg, envir = .GlobalEnv) assign("orglist", orglist, envir = .GlobalEnv) assign("CR", CR, envir = .GlobalEnv) assign("temptest", temptest, envir = .GlobalEnv) assign("aveorgtemp3", aveorgtemp3, envir = .GlobalEnv) assign("aveorgtemp2", aveorgtemp2, envir = .GlobalEnv) assign("aveorgtemp", aveorgtemp, envir = .GlobalEnv) assign("leng", leng, envir = .GlobalEnv) assign("lenglim", lenglim, envir = .GlobalEnv) assign("converg", converg, envir = .GlobalEnv) assign("conversave", conversave, envir = .GlobalEnv) assign("convergcount", convergcount, envir = .GlobalEnv) assign("convnum", convnum, envir = .GlobalEnv) assign("mlc", mlc, envir = .GlobalEnv) assign("indices", indices, envir = .GlobalEnv) assign("orgtemp2", orgtemp2, envir = .GlobalEnv) assign("orgs_x_min", orgs_x_min, envir = .GlobalEnv) assign("orgs_x_max", orgs_x_max, envir = .GlobalEnv) assign("orgs_lengx", orgs_lengx, envir = .GlobalEnv) assign("orgs_y_min", orgs_y_min, envir = .GlobalEnv) assign("orgs_y_max", orgs_y_max, envir = .GlobalEnv) assign("orgs_lengy", orgs_lengy, envir = .GlobalEnv) assign("orgs_z_min", orgs_z_min, envir = .GlobalEnv) assign("orgs_z_max", orgs_z_max, envir = .GlobalEnv) assign("orgs_lengz", orgs_lengz, envir = .GlobalEnv) assign("rang_orgs", rang_orgs, envir = .GlobalEnv) assign("totaeco", totaeco, envir = .GlobalEnv) assign("ecoindices", ecoindices, envir = .GlobalEnv) assign("eco_y_min", eco_y_min, envir = .GlobalEnv) assign("eco_y_max", eco_y_max, envir = .GlobalEnv) assign("eco_y", eco_y, envir = .GlobalEnv) assign("eco_y_leng", eco_y_leng, envir = .GlobalEnv) assign("eco_x_min", eco_x_min, envir = .GlobalEnv) assign("eco_x_max", eco_x_max, envir = .GlobalEnv) assign("eco_x", eco_x, envir = .GlobalEnv) assign("eco_x_leng", eco_x_leng, envir = .GlobalEnv) assign("eco_z_min", eco_z_min, envir = .GlobalEnv) assign("eco_z_max", eco_z_max, envir = .GlobalEnv) assign("eco_z", eco_z, envir = .GlobalEnv) assign("eco_z_leng", eco_z_leng, envir = .GlobalEnv) assign("ecorange", ecorange, envir = .GlobalEnv) assign("ext_org", ext_org, envir = .GlobalEnv) assign("replim", replim, envir = .GlobalEnv) assign("cjk", cjk, envir = .GlobalEnv) assign("xjk", xjk, envir = .GlobalEnv) assign("top", top, envir = .GlobalEnv) assign("caltop", caltop, envir = .GlobalEnv) assign("inten_rang", inten_rang, envir = .GlobalEnv) assign("inten_cell", inten_cell, envir = .GlobalEnv) assign("Bivar_count_lo", Bivar_count_lo, envir = .GlobalEnv) assign("Bivar_count_hi", Bivar_count_hi, envir = .GlobalEnv) assign("tempcoordloc", tempcoordloc, envir = .GlobalEnv) assign("e", e, envir = .GlobalEnv) assign("extenlist", extenlist, envir = .GlobalEnv) assign("exten_means", exten_means, envir = .GlobalEnv) assign("intencellhist", intencellhist, envir = .GlobalEnv) assign("intencelllist", intencelllist, envir = .GlobalEnv) assign("intencell_means", intencell_means, envir = .GlobalEnv) assign("intenranghist", intenranghist, envir = .GlobalEnv) assign("intenranglist", intenranglist, envir = .GlobalEnv) assign("intenrang_means", intenrang_means, envir = .GlobalEnv) assign("sumorghist", sumorghist, envir = .GlobalEnv) assign("sumorglist", sumorglist, envir = .GlobalEnv) assign("sumorghist_means", sumorghist_means, envir = .GlobalEnv) assign("orgs_x_minhist", orgs_x_minhist, envir = .GlobalEnv) assign("orgs_x_minlist", orgs_x_minlist, envir = .GlobalEnv) assign("orgs_x_min_means", orgs_x_min_means, envir = .GlobalEnv) assign("orgs_x_maxhist", orgs_x_maxhist, envir = .GlobalEnv) assign("orgs_x_maxlist", orgs_x_maxlist, envir = .GlobalEnv) assign("orgs_x_max_means", orgs_x_max_means, envir = .GlobalEnv) assign("orgs_y_minhist", orgs_y_minhist, envir = .GlobalEnv) assign("orgs_y_minlist", orgs_y_minlist, envir = .GlobalEnv) assign("orgs_y_min_means", orgs_y_min_means, envir = .GlobalEnv) assign("orgs_y_maxhist", orgs_y_maxhist, envir = .GlobalEnv) assign("orgs_y_maxlist", orgs_y_maxlist, envir = .GlobalEnv) assign("orgs_y_max_means", orgs_y_max_means, envir = .GlobalEnv) assign("orgs_z_minhist", orgs_z_minhist, envir = .GlobalEnv) assign("orgs_z_minlist", orgs_x_minlist, envir = .GlobalEnv) assign("orgs_z_min_means", orgs_z_min_means, envir = .GlobalEnv) assign("orgs_z_maxhist", orgs_z_maxhist, envir = .GlobalEnv) assign("orgs_z_maxlist", orgs_z_maxlist, envir = .GlobalEnv) assign("orgs_z_max_means", orgs_z_max_means, envir = .GlobalEnv) assign("locrun", locrun, envir = .GlobalEnv) assign("aveorglist_temp", aveorglist_temp, envir = .GlobalEnv) assign("aveorglist_matrix", aveorglist_matrix, envir = .GlobalEnv) assign("sumorg_sim", sumorg_sim, envir = .GlobalEnv) assign("totalmatrix", totalmatrix, envir = .GlobalEnv) assign("total", total, envir = .GlobalEnv) assign("resource_sim", resource_sim, envir = .GlobalEnv) assign("population", population, envir = .GlobalEnv) assign("weights", weights, envir = .GlobalEnv) assign("capacity", capacity, envir = .GlobalEnv) assign("wcapacity", wcapacity, envir = .GlobalEnv) assign("sim_wcarry_capacity", sim_wcarry_capacity, envir = .GlobalEnv) assign("exploitation", exploitation, envir = .GlobalEnv) assign("exploitation_value_members", exploitation_value_members, envir = .GlobalEnv) assign("exploitation_value_space", exploitation_value_space, envir = .GlobalEnv) assign("exploitation_value_space_range", exploitation_value_space_range, envir = .GlobalEnv) assign("exploitMhist", exploitMhist, envir = .GlobalEnv) assign("WCChist", WCChist, envir = .GlobalEnv) assign("countlist", countlist, envir = .GlobalEnv) assign("indices", indices, envir = .GlobalEnv) assign("orgtemp2", orgtemp2, envir = .GlobalEnv) assign("orgs_x_min", orgs_x_min, envir = .GlobalEnv) assign("orgs_x_max", orgs_x_max, envir = .GlobalEnv) assign("orgs_lengx", orgs_lengx, envir = .GlobalEnv) assign("orgs_y_min", orgs_y_min, envir = .GlobalEnv) assign("orgs_y_max", orgs_y_max, envir = .GlobalEnv) assign("orgs_lengy", orgs_lengy, envir = .GlobalEnv) assign("orgs_z_min", orgs_z_min, envir = .GlobalEnv) assign("orgs_z_max", orgs_z_max, envir = .GlobalEnv) assign("orgs_lengz", orgs_lengz, envir = .GlobalEnv) assign("rang_orgs", rang_orgs, envir = .GlobalEnv) assign("totaeco", totaeco, envir = .GlobalEnv) assign("ecoindices", ecoindices, envir = .GlobalEnv) assign("eco_y_min", eco_y_min, envir = .GlobalEnv) assign("eco_y_max", eco_y_max, envir = .GlobalEnv) assign("eco_y", eco_y, envir = .GlobalEnv) assign("eco_y_leng", eco_y_leng, envir = .GlobalEnv) assign("eco_x_min", eco_x_min, envir = .GlobalEnv) assign("eco_x_max", eco_x_max, envir = .GlobalEnv) assign("eco_x", eco_x, envir = .GlobalEnv) assign("eco_x_leng", eco_x_leng, envir = .GlobalEnv) assign("eco_z_min", eco_z_min, envir = .GlobalEnv) assign("eco_z_max", eco_z_max, envir = .GlobalEnv) assign("eco_z", eco_z, envir = .GlobalEnv) assign("eco_z_leng", eco_z_leng, envir = .GlobalEnv) assign("ecorange", ecorange, envir = .GlobalEnv) assign("ext_org", ext_org, envir = .GlobalEnv) assign("replim", replim, envir = .GlobalEnv) assign("cjk", cjk, envir = .GlobalEnv) assign("xjk", xjk, envir = .GlobalEnv) assign("top", top, envir = .GlobalEnv) assign("caltop", caltop, envir = .GlobalEnv) assign("inten_rang", inten_rang, envir = .GlobalEnv) assign("inten_cell", inten_cell, envir = .GlobalEnv) assign("Bivar_count_lo", Bivar_count_lo, envir = .GlobalEnv) assign("Bivar_count_hi", Bivar_count_hi, envir = .GlobalEnv) assign("OGorgsum", OGorgsum, envir = .GlobalEnv) assign("output_df", output_df, envir = .GlobalEnv) assign("sumorg_OG", sumorg_OG, envir = .GlobalEnv) assign("totalmatrix", totalmatrix, envir = .GlobalEnv) assign("total", total, envir = .GlobalEnv) assign("resource_OG", resource_OG, envir = .GlobalEnv) assign("weights", weights, envir = .GlobalEnv) assign("capacity", capacity, envir = .GlobalEnv) assign("wcapacity", wcapacity, envir = .GlobalEnv) assign("OG_wcarry_capacity", OG_wcarry_capacity, envir = .GlobalEnv) assign("OG_capacity", OG_capacity, envir = .GlobalEnv) assign("exploitation", exploitation, envir = .GlobalEnv) assign("exploitation_value_members", exploitation_value_members, envir = .GlobalEnv) assign("exploitation_value_space", exploitation_value_space, envir = .GlobalEnv) assign("exploitation_value_space_range", exploitation_value_space_range, envir = .GlobalEnv) assign("OG_Exploitation_members", OG_Exploitation_members, envir = .GlobalEnv) assign("OG_Exploitation_space", OG_Exploitation_space, envir = .GlobalEnv) assign("OG_Exploitation_space_range", OG_Exploitation_space_range, envir = .GlobalEnv) assign("exploithist_matrix", exploithist_matrix, envir = .GlobalEnv) assign("exploitation_mean", exploitation_mean, envir = .GlobalEnv) assign("wcarry_matrix", wcarry_matrix, envir = .GlobalEnv) assign("wcarry_mean", wcarry_mean, envir = .GlobalEnv) assign("exten_GOF_means", exten_GOF_means, envir = .GlobalEnv) assign("exten_GOF_SD", exten_GOF_SD, envir = .GlobalEnv) assign("exten_GOF_min", exten_GOF_min, envir = .GlobalEnv) assign("exten_GOF_max", exten_GOF_max, envir = .GlobalEnv) assign("exten_adj_mean", exten_adj_mean, envir = .GlobalEnv) assign("exten_adj_var", exten_adj_var, envir = .GlobalEnv) assign("exten_adj_SD", exten_adj_SD, envir = .GlobalEnv) assign("exten_t_score", exten_t_score, envir = .GlobalEnv) assign("exten_p_value", exten_p_value, envir = .GlobalEnv) assign("intencell_GOF_means", intencell_GOF_means, envir = .GlobalEnv) assign("intencell_GOF_SD", intencell_GOF_SD, envir = .GlobalEnv) assign("intencell_GOF_min", intencell_GOF_min, envir = .GlobalEnv) assign("intencell_GOF_max", intencell_GOF_max, envir = .GlobalEnv) assign("intencell_adj_mean", intencell_adj_mean, envir = .GlobalEnv) assign("intencell_adj_var", intencell_adj_var, envir = .GlobalEnv) assign("intencell_adj_SD", intencell_adj_SD, envir = .GlobalEnv) assign("intencell_t_score", intencell_t_score, envir = .GlobalEnv) assign("intencell_p_value", intencell_p_value, envir = .GlobalEnv) assign("intenrang_GOF_means", intenrang_GOF_means, envir = .GlobalEnv) assign("intenrang_GOF_SD", intenrang_GOF_SD, envir = .GlobalEnv) assign("intenrang_GOF_min", intenrang_GOF_min, envir = .GlobalEnv) assign("intenrang_GOF_max", intenrang_GOF_max, envir = .GlobalEnv) assign("intenrang_adj_mean", intenrang_adj_mean, envir = .GlobalEnv) assign("intenrang_adj_var", intenrang_adj_var, envir = .GlobalEnv) assign("intenrang_adj_SD", intenrang_adj_SD, envir = .GlobalEnv) assign("intenrang_t_score", intenrang_t_score, envir = .GlobalEnv) assign("intenrang_p_value", intenrang_p_value, envir = .GlobalEnv) assign("Exploitation_M_GOF_means", Exploitation_M_GOF_means, envir = .GlobalEnv) assign("Exploitation_M_GOF_SD", Exploitation_M_GOF_SD, envir = .GlobalEnv) assign("Exploitation_M_GOF_min", Exploitation_M_GOF_min, envir = .GlobalEnv) assign("Exploitation_M_GOF_max", Exploitation_M_GOF_max, envir = .GlobalEnv) assign("Exploitation_M_adj_mean", Exploitation_M_adj_mean, envir = .GlobalEnv) assign("Exploitation_M_adj_var", Exploitation_M_adj_var, envir = .GlobalEnv) assign("Exploitation_M_adj_SD", Exploitation_M_adj_SD, envir = .GlobalEnv) assign("Exploitation_M_t_score", Exploitation_M_t_score, envir = .GlobalEnv) assign("Exploitation_M_p_value", Exploitation_M_p_value, envir = .GlobalEnv) assign("Wcarry_capacity_GOF_means", Wcarry_capacity_GOF_means, envir = .GlobalEnv) assign("Wcarry_capacity_M_GOF_SD", Exploitation_GOF_SD, envir = .GlobalEnv) assign("Wcarry_capacity_GOF_min", Wcarry_capacity_GOF_min, envir = .GlobalEnv) assign("Wcarry_capacity_GOF_max", Wcarry_capacity_GOF_max, envir = .GlobalEnv) assign("Wcarry_capacity_adj_mean", Wcarry_capacity_adj_mean, envir = .GlobalEnv) assign("Wcarry_capacity_adj_var", Wcarry_capacity_adj_var, envir = .GlobalEnv) assign("Wcarry_capacity_adj_SD", Wcarry_capacity_adj_SD, envir = .GlobalEnv) assign("Wcarry_capacity_t_score", Wcarry_capacity_t_score, envir = .GlobalEnv) assign("Wcarry_capacity_p_value", Wcarry_capacity_p_value, envir = .GlobalEnv) File ‘UrnModel/R/HBSmDataImp.R’: assign("nDim", nDim, envir = .GlobalEnv) assign("entlist", entlist, envir = .GlobalEnv) assign("entities", entities, envir = .GlobalEnv) assign("Importdat", Importdat, envir = .GlobalEnv) assign("demographics", demographics, envir = .GlobalEnv) assign("dim1var", dim1var, envir = .GlobalEnv) assign("d1", d1, envir = .GlobalEnv) assign("dim2var", dim2var, envir = .GlobalEnv) assign("d2", d2, envir = .GlobalEnv) assign("dim3var", dim3var, envir = .GlobalEnv) assign("d3", d3, envir = .GlobalEnv) assign("d1r", d1r, envir = .GlobalEnv) assign("d2r", d2r, envir = .GlobalEnv) assign("d3r", d3r, envir = .GlobalEnv) assign("template_array", template_array, envir = .GlobalEnv) assign("OGorgs", OGorgs, envir = .GlobalEnv) assign("tempedulev_year", tempedulev_year, envir = .GlobalEnv) assign("tempage_year", tempage_year, envir = .GlobalEnv) assign("income_year", income_year, envir = .GlobalEnv) assign("d1_check", d1_check, envir = .GlobalEnv) assign("d2_check", d2_check, envir = .GlobalEnv) assign("d3_check", d3_check, envir = .GlobalEnv) assign("coordims1", coordims1, envir = .GlobalEnv) assign("coordims2", coordims2, envir = .GlobalEnv) assign("coordims3", coordims3, envir = .GlobalEnv) assign("Orgnames", Orgnames, envir = .GlobalEnv) assign("temporg", temporg, envir = .GlobalEnv) assign("logInd", logInd, envir = .GlobalEnv) assign("OGorgs", OGorgs, envir = .GlobalEnv) assign("OGorgs", OGorgs, envir = .GlobalEnv) assign("totindi", totindi, envir = .GlobalEnv) * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'HBSm.Rd': \examples lines wider than 100 characters: HBSm(glob = 2, chec = 500, maxr = 4000, tol = 8, r = 1, convr = 15, prefix="GSS", year = "1974", saveDir = "C:/Users/Username/Blau Code ... [TRUNCATED] Rd file 'HBSmDataImp.Rd': \examples lines wider than 100 characters: urndataimp(dataDir = "C:/Users/username/Desktop/UrnModel/Data/GSS Cleaned", nDim = 3, entities=16, entlist=orgnames, d1lab = "educ", d2 ... [TRUNCATED] These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [0s/0s] ERROR Running examples in ‘UrnModel-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: HBSm > ### Title: Hybrid Blau Model Sim > ### Aliases: HBSm > > ### ** Examples > > HBSm(glob = 2, chec = 500, maxr = 4000, tol = 8, r = 1, convr = 15, prefix="GSS", year = "1974", saveDir = "C:/Users/Username/Blau Code/saves") Error in HBSm(glob = 2, chec = 500, maxr = 4000, tol = 8, r = 1, convr = 15, : object 'entities' not found Calls: HBSm -> assign Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 3 NOTEs