* installing *source* package ‘UNMASC’ ...
** this is package ‘UNMASC’ version ‘1.0.0’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw  -c UNMASC.cpp -o UNMASC.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw  -c allele_freq.cpp -o allele_freq.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw  -c minor.cpp -o minor.o
minor.cpp:283:31: warning: variable 'ms' is uninitialized when used here [-Wuninitialized]
  283 |         BIC = 2*old_LL - std::log(B)*ms;
      |                                      ^~
minor.cpp:242:35: note: initialize the variable 'ms' to silence this warning
  242 |         arma::uword B = DP.n_elem, cc, ms,
      |                                          ^
      |                                           = 0
1 warning generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-19/lib -Wl,-O1 -o UNMASC.so RcppExports.o UNMASC.o allele_freq.o minor.o -llapack -L/home/hornik/tmp/R-d-clang-19/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-19/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/UNMASC.Rcheck/00LOCK-UNMASC/00new/UNMASC/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (UNMASC)