context("qtrunc, upper truncation") test_that("qtrunc() works as expected (beta)", { for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { shp1 <- sample(1:10, 1L) shp2 <- sample(1:10, 1L) pt <- runif(i) qt <- c(runif(100L), pt) a <- min(qt) - rchisq(1L, 5L) b <- max(qt) + rchisq(1L, 5L) if (lg) pt <- log(pt) q_trunc <- qtrunc( pt, "beta", shp1, shp2, a = a, b = b, lower.tail = lt, log.p = lg ) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc( q_trunc[ii], "beta", shp1, shp2, lower.tail = lt, log.p = lg, a = a, b = b ) expect_equal(pt[ii], ptr) } } } } }) test_that("qtrunc() works as expected (binomial)", { fam <- "binomial" for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { sz <- sample(1:10, 1L) pb <- runif(1) pt <- runif(i) ab_pr <- c(runif(100L), pt) b <- qtrunc(max(ab_pr), fam, sz, pb, lower.tail = TRUE, log.p = FALSE) a <- qtrunc(min(ab_pr), fam, sz, pb, lower.tail = TRUE, log.p = FALSE) if (lg) pt <- log(pt) q_trunc <- qtrunc( pt, fam, sz, pb, a = a, b = b, lower.tail = lt, log.p = lg ) q_stats <- qbinom(pt, sz, pb, lower.tail = lt, log.p = lg) expect_length(pt, i) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q q_lo <- max(q_trunc[ii] - 1L, 0L, a) q_hi <- min(q_trunc[ii] + 1L, sz, b) ptr_1 <- ptrunc( q_lo, fam, sz, pb, a = a, b = b, lower.tail = lt, log.p = lg ) ptr_2 <- ptrunc( q_hi, fam, sz, pb, a = a, b = b, lower.tail = lt, log.p = lg ) # because pt will have been rounded if (q_trunc[ii] > 0L && q_hi < b && q_lo > a) { if (lt) { expect_gte(pt[ii], ptr_1) expect_lte(pt[ii], ptr_2) } else { expect_lte(pt[ii], ptr_1) expect_gte(pt[ii], ptr_2) } } } } } } }) test_that("qtrunc() works as expected (chisq)", { fam <- "chisq" for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { df <- sample(1:10, 1L) pt <- runif(i) a <- min(qtrunc(pt, fam, df, lower.tail = lt, log.p = FALSE) / 2000) b <- max(qtrunc(pt, fam, df, lower.tail = lt, log.p = FALSE) * 2000) if (lg) pt <- log(pt) q_trunc <- qtrunc( pt, fam, df, lower.tail = lt, log.p = lg, a = a, b = b ) q_stats <- qchisq(pt, df, lower.tail = lt, log.p = lg) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc( q_trunc[ii], fam, df, lower.tail = lt, log.p = lg, a = a, b = b ) expect_equal(pt[ii], ptr) } } } } }) test_that("qtrunc() works as expected (contbern)", { fam <- "contbern" for (i in seq_len(3L)) { lambda <- runif(1L) pt <- runif(i) a <- runif(1L) b <- runif(1L, a, 1L) q_trunc <- qtrunc(pt, fam, lambda, a = a, b = b) q_stats <- qcontbern(pt, lambda) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc(q_trunc[ii], fam, lambda, a = a, b = b) expect_equal(pt[ii], ptr) } } }) test_that("qtrunc() works as expected (exp)", { fam <- "exp" for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { rate <- rchisq(1L, df = 10L) pt <- runif(i) a <- rexp(1L, rate) b <- rexp(1L, rate) while (b <= a) { b <- rexp(1L, rate) } if (lg) pt <- log(pt) q_trunc <- qtrunc( pt, fam, rate, lower.tail = lt, log.p = lg, a = a, b = b ) q_stats <- qexp(pt, rate, lower.tail = lt, log.p = lg) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc( q_trunc[ii], fam, rate, lower.tail = lt, log.p = lg, a = a, b = b ) expect_equal(pt[ii], ptr) } } } } }) test_that("qtrunc() works as expected (gamma)", { fam <- "gamma" for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { shp <- rchisq(1L, df = 10L) rte <- rchisq(1L, df = 10L) pt <- runif(i) ab <- rgamma(2L, shp, rte) a <- min(ab) b <- max(ab) if (lg) pt <- log(pt) q_trunc <- qtrunc( pt, fam, shp, rte, lower.tail = lt, log.p = lg, a = a, b = b ) q_stats <- qgamma(pt, shp, rte, lower.tail = lt, log.p = lg) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc( q_trunc[ii], fam, shp, rte, lower.tail = lt, log.p = lg, a = a, b = b ) expect_equal(pt[ii], ptr) } } } } }) test_that("q_trunc() works as expected (invgamma)", { fam <- "invgamma" for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { shp <- rchisq(1L, df = 10L) rte <- rchisq(1L, df = 10L) skl <- 1 / rte pt <- runif(i) if (lg) pt <- log(pt) ab <- rinvgamma(2L, shp, rte) a <- min(ab) b <- max(ab) q_trunc_sr <- qtrunc( pt, fam, shp, rte, a = a, b = b, lower.tail = lt, log.p = lg ) q_trunc_ss <- qtrunc( pt, fam, shp, scale = skl, a = a, b = b, lower.tail = lt, log.p = lg ) if (lg) { q_stats <- qinvgamma( exp(pt), shp, rte, lower.tail = lt, log.p = FALSE ) } else { q_stats <- qinvgamma(pt, shp, rte, lower.tail = lt, log.p = lg) } expect_length(pt, i) expect_length(q_trunc_sr, i) expect_equal(q_trunc_sr, q_trunc_ss) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc( q_trunc_sr[ii], fam, shp, rte, lower.tail = lt, log.p = lg, a = a, b = b ) expect_equal(pt[ii], ptr) } } } } }) test_that("qtrunc() works as expected (invgauss)", { fam <- "invgauss" for (i in seq_len(3L)) { m <- rchisq(1L, df = 10L) s <- rchisq(1L, df = 10L) a <- min(rinvgauss(10L, m, s)) b <- max(rinvgauss(10L, m, s), a) pt <- runif(i) q_trunc <- qtrunc(pt, fam, m, s, a, b) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc(q_trunc[ii], fam, m, s, a = a, b = b) expect_equal(pt[ii], ptr, tolerance = 1e-3) } } }) test_that("qtrunc() works as expected (lognormal)", { fam <- "lognormal" for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { mn <- rnorm(1L, sd = 10) sg <- rchisq(1L, 5L) pt <- runif(i) a <- qtrunc(min(pt) ^ 2, fam, mn, sg, lower.tail = TRUE, log.p = FALSE) b <- qtrunc( sqrt(max(pt)), fam, mn, sg, lower.tail = TRUE, log.p = FALSE ) if (lg) pt <- log(pt) q_trunc <- qtrunc(pt, fam, mn, sg, a, b, lower.tail = lt, log.p = lg) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc( q_trunc[ii], fam, mn, sg, a, b, lower.tail = lt, log.p = lg ) expect_equal(pt[ii], ptr) } } } } }) test_that("qtrunc() works as expected (negbinom)", { fam <- "nbinom" for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { sz <- sample(1:10, 1L) pb <- runif(1) mu <- sz * (1 - pb) / pb pt <- runif(i) a <- qtrunc(min(pt) ^ 2, fam, sz, pb, lower.tail = TRUE, log.p = FALSE) b <- qtrunc( sqrt(max(pt)), fam, sz, pb, lower.tail = TRUE, log.p = FALSE ) if (lg) pt <- log(pt) q_trunc_pb <- qtrunc( pt, fam, sz, pb, a = a, b = b, lower.tail = lt, log.p = lg ) q_trunc_mu <- qtrunc( pt, fam, sz, mu = mu, a = a, b = b, lower.tail = lt, log.p = lg ) q_stats <- qnbinom(pt, sz, pb, lower.tail = lt, log.p = lg) expect_length(q_trunc_pb, i) expect_equal(q_trunc_pb, q_trunc_mu, tolerance = 1e-6) for (ii in seq_along(pt)) { # Working back to p from q q_lo <- max(q_trunc_pb[ii] - 1L, 0L, a) q_hi <- min(q_trunc_pb[ii] + 1L, b) ptr_1 <- ptrunc( q_lo, fam, sz, pb, a = a, b = b, lower.tail = lt, log.p = lg ) ptr_2 <- ptrunc( q_hi, fam, sz, pb, a = a, b = b, lower.tail = lt, log.p = lg ) # because pt will have been rounded if (lt) { expect_lte(ptr_1, ptr_2) } else { expect_gte(ptr_1, ptr_2) } } } } } }) test_that("qtrunc() works as expected (normal)", { for (lg in c(FALSE, TRUE)) { for (lt in c(TRUE, FALSE)) { for (i in seq_len(3L)) { mn <- rnorm(1L, sd = 10) sg <- rchisq(1L, 5L) pt <- runif(i) ab <- c(runif(100L), pt) b <- qtrunc( max(ab), mean = mn, sd = sg, lower.tail = TRUE, log.p = FALSE ) a <- qtrunc( min(ab), mean = mn, sd = sg, lower.tail = TRUE, log.p = FALSE ) if (lg) pt <- log(pt) q_trunc <- qtrunc( pt, "normal", mean = mn, sd = sg, a = a, b = b, lower.tail = lt, log.p = lg ) expect_length(q_trunc, i) for (ii in seq_along(pt)) { # Working back to p from q ptr <- ptrunc( q_trunc[ii], "normal", mean = mn, sd = sg, a = a, b = b, lower.tail = lt, log.p = lg ) expect_equal(pt[ii], ptr) } } } } }) test_that("qtrunc() works as expected (poisson)", { fam <- "poisson" for (lt in c(TRUE, FALSE)) { for (lg in c(FALSE, TRUE)) { for (i in seq_len(3L)) { lambda <- sample(1:50, 1L) pt <- runif(i) a <- qtrunc(min(pt) / 2, fam, lambda, lower.tail = TRUE, log.p = FALSE) b <- qtrunc( sqrt(max(pt)), fam, lambda, lower.tail = TRUE, log.p = FALSE ) if (lg) pt <- log(pt) q_trunc <- qtrunc( pt, fam, lambda, a = a, b = b, lower.tail = lt, log.p = lg ) q_stats <- qpois(pt, lambda, lower.tail = lt, log.p = lg) expect_length(q_trunc, i) for (ii in seq_along(pt)) { q_lo <- max(q_trunc[ii] - 1L, 0L, a) q_hi <- min(q_trunc[ii] + 1L, b) ptr_1 <- ptrunc( q_lo, fam, lambda, a = a, b = b, lower.tail = lt, log.p = lg ) ptr_2 <- ptrunc( q_hi, fam, lambda, a = a, b = b, lower.tail = lt, log.p = lg ) # because pt will have been rounded if (lt) { expect_lte(ptr_1, ptr_2) } else { expect_gte(ptr_1, ptr_2) } } } } } })