downloading reverse dependencies ...
downloading fishboot_1.0.0.tar.gz ... ok

installing dependencies ‘fishmethods’, ‘ks’, ‘TropFishR’

begin installing package ‘TropFishR’
begin installing package ‘ks’
begin installing package ‘fishmethods’
* installing *source* package ‘TropFishR’ ...
** this is package ‘TropFishR’ version ‘1.6.6’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TropFishR)
* installing *source* package ‘ks’ ...
** this is package ‘ks’ version ‘1.15.0’
** package ‘ks’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRZGgdu/R.INSTALL30bddf4301940/ks/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ks.c -o ks.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ks.so ks.o -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRZGgdu/R.INSTALL30bddf4301940/ks/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ks/00new/ks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ks)
* installing *source* package ‘fishmethods’ ...
** this is package ‘fishmethods’ version ‘1.13-1’
** package ‘fishmethods’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRLriy1/R.INSTALL30bddd7ce8ed7f/fishmethods/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c init_dummy_file.cpp -o init_dummy_file.o
(cd TMB; /home/hornik/tmp/R/bin/Rscript \
--no-save --no-restore compile.R '')
Note: Using Makevars in /home/hornik/.R/Makevars-gcc 
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpRLriy1/R.INSTALL30bddd7ce8ed7f/fishmethods/src/TMB'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_fishmethods_TMBExports  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fishmethods_TMBExports.cpp -o fishmethods_TMBExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fishmethods_TMBExports.so fishmethods_TMBExports.o -L/home/hornik/tmp/R/lib -lR
make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpRLriy1/R.INSTALL30bddd7ce8ed7f/fishmethods/src/TMB'
[1] TRUE
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fishmethods.so init_dummy_file.o -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRLriy1/R.INSTALL30bddd7ce8ed7f/fishmethods/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fishmethods/00new/fishmethods/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fishmethods)

checking TropFishR_1.6.6.tar.gz ...
checking fishboot_1.0.0.tar.gz ...

Depends:
Package: TropFishR
  Depends: R (>= 3.0.0)
  Imports: Matrix, msm, reshape2, MASS, GenSA, GA, stats, utils,
    parallel, doParallel

Timings:
            user system elapsed
TropFishR 78.805  6.464  88.221

Results:
Check status summary:
                  ERROR OK
  Source packages     0  1
  Reverse depends     1  0

Check results summary:
TropFishR ... OK
rdepends_fishboot ... ERROR
* checking whether package ‘fishboot’ can be installed ... [6s/6s] WARNING
* checking R code for possible problems ... [8s/8s] NOTE
* checking examples ... [6s/6s] ERROR

Check results changes:
Package: fishboot
Check: examples
Old result: NOTE
New result: ERROR

Package: fishboot
Check: R code for possible problems
New result: NOTE

Package: fishboot
Check: whether package can be installed
New result: WARNING