* installing *source* package ‘TreeSearch’ ...
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (11)’
using C++ compiler: ‘Debian clang version 16.0.6 (11)’
using C++17
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RMorphy.c -o RMorphy.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RMorphyUtils.c -o RMorphyUtils.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c TreeSearch-init.c -o TreeSearch-init.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fitch.c -o fitch.o
fitch.c:193:19: warning: variable 'steps' set but not used [-Wunused-but-set-variable]
  int             steps   = 0;
                  ^
1 warning generated.
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c morphy.c -o morphy.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c morphy_score.cpp -o morphy_score.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c mpl.c -o mpl.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c rearrange.cpp -o rearrange.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c statedata.c -o statedata.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c wagner.c -o wagner.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o TreeSearch.so RMorphy.o RMorphyUtils.o RcppExports.o TreeSearch-init.o fitch.o morphy.o morphy_score.o mpl.o rearrange.o statedata.o wagner.o -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/TreeSearch.Rcheck/00LOCK-TreeSearch/00new/TreeSearch/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TreeSearch)