R Under development (unstable) (2026-02-09 r89390 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(TreatmentPatterns)
> 
> test_check("TreatmentPatterns")
Starting 2 test processes.
> test-computePathways.R: 
> test-computePathways.R: Attaching package: 'dplyr'
> test-computePathways.R: 
> test-computePathways.R: The following objects are masked from 'package:stats':
> test-computePathways.R: 
> test-computePathways.R:     filter, lag
> test-computePathways.R: 
> test-computePathways.R: The following objects are masked from 'package:base':
> test-computePathways.R: 
> test-computePathways.R:     intersect, setdiff, setequal, union
> test-computePathways.R: 
> test-CRAN.R: -- Qualifying records for cohort definitions: 1, 2, 3, 4, 5, 6, 7, 8
> test-CRAN.R: 	Records: 14041
> test-CRAN.R: 	Subjects: 2693
> test-CRAN.R: -- Removing records < minEraDuration (0)
> test-CRAN.R: 	Records: 11386
> test-CRAN.R: 	Subjects: 2159
> test-CRAN.R: >> Starting on target: 8 (viralsinusitis)
> test-CRAN.R: -- Removing events outside window (startDate: 0 | endDate: 0)
> test-CRAN.R: 	Records: 8366
> test-CRAN.R: 	Subjects: 2144
> test-CRAN.R: -- splitEventCohorts
> test-CRAN.R: 	Records: 8366
> test-CRAN.R: 	Subjects: 2144
> test-CRAN.R: -- No eras needed Collapsing, eraCollapse (30)
> test-CRAN.R: 	Records: 8366
> test-CRAN.R: 	Subjects: 2144
> test-CRAN.R: -- Iteration 1: minPostCombinationDuration (30), combinatinoWindow (30)
> test-CRAN.R: 	Records: 558
> test-CRAN.R: 	Subjects: 512
> test-CRAN.R: -- Iteration 2: minPostCombinationDuration (30), combinatinoWindow (30)
> test-CRAN.R: 	Records: 554
> test-CRAN.R: 	Subjects: 512
> test-CRAN.R: -- After Combination
> test-CRAN.R: 	Records: 554
> test-CRAN.R: 	Subjects: 512
> test-CRAN.R: -- filterTreatments (First)
> test-CRAN.R: 	Records: 553
> test-CRAN.R: 	Subjects: 512
> test-CRAN.R: -- Max path length (5)
> test-CRAN.R: 	Records: 553
> test-CRAN.R: 	Subjects: 512
> test-CRAN.R: -- treatment construction done
> test-CRAN.R: 	Records: 553
> test-CRAN.R: 	Subjects: 512
> test-CRAN.R: Writing treatment history to: D:\temp\2026_02_10_17_20_16_22495\RtmpoPdV54/tp/treatment_history.csv
> test-CRAN.R: Writing metadata to: D:\temp\2026_02_10_17_20_16_22495\RtmpoPdV54/tp/metadata.csv
> test-CRAN.R: Writing attrition to: D:\temp\2026_02_10_17_20_16_22495\RtmpoPdV54/tp/attrition.csv
> test-CRAN.R: Writing cdm source info to: D:\temp\2026_02_10_17_20_16_22495\RtmpoPdV54/tp/cdm_source_info.csv
[ FAIL 0 | WARN 2 | SKIP 105 | PASS 26 ]

══ Skipped tests (105) ═════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (1): 'test-multipleCohortTables.R:67:3'
• On CRAN (104): 'test-TreatmentPatternsResults.R:2:3',
  'test-TreatmentPatternsResults.R:24:3',
  'test-TreatmentPatternsResults.R:52:3',
  'test-TreatmentPatternsResults.R:80:3',
  'test-TreatmentPatternsResults.R:85:3',
  'test-TreatmentPatternsResults.R:97:3',
  'test-TreatmentPatternsResults.R:111:3',
  'test-TreatmentPatternsResults.R:125:3',
  'test-TreatmentPatternsResults.R:147:3',
  'test-TreatmentPatternsResults.R:165:3', 'test-computePathways.R:30:3',
  'test-computePathways.R:74:3', 'test-computePathways.R:129:3',
  'test-computePathways.R:144:3', 'test-computePathways.R:182:3',
  'test-computePathways.R:197:3', 'test-computePathways.R:229:3',
  'test-computePathways.R:246:3', 'test-computePathways.R:351:3',
  'test-computePathways.R:508:3', 'test-computePathways.R:557:3',
  'test-computePathways.R:606:3', 'test-computePathways.R:623:3',
  'test-computePathways.R:642:3', 'test-createSankeyDiagram.R:13:3',
  'test-createSankeyDiagram.R:18:3', 'test-createSankeyDiagram.R:37:3',
  'test-createSankeyDiagram.R:84:3', 'test-createSankeyDiagram.R:124:3',
  'test-createSankeyDiagram.R:151:3', 'test-createSunburstPlot.R:17:3',
  'test-createSunburstPlot.R:26:3', 'test-createSunburstPlot.R:39:3',
  'test-executeTreatmentPatterns.R:5:3',
  'test-executeTreatmentPatterns.R:26:3', 'test-export.R:8:3',
  'test-export.R:15:3', 'test-export.R:309:3', 'test-export.R:373:3',
  'test-export.R:419:3', 'test-export.R:458:3', 'test-export.R:499:3',
  'test-export.R:571:3', 'test-export.R:642:3', 'test-export.R:667:3',
  'test-exportPatientLevel.R:2:3',
  'test-getResultsDataModelSpecifications.R:2:3', 'test-ggSunburst.R:2:3',
  'test-ggSunburst.R:26:3', 'test-ggSunburst.R:44:3',
  'test-multipleCohortTables.R:6:3', 'test-multipleCohortTables.R:116:3',
  'test-pathwaysLogical.R:6:3', 'test-pathwaysLogical.R:46:3',
  'test-pathwaysLogical.R:88:3', 'test-pathwaysLogical.R:130:3',
  'test-pathwaysLogical.R:172:3', 'test-pathwaysLogical.R:214:3',
  'test-pathwaysLogical.R:256:3', 'test-pathwaysLogical.R:299:3',
  'test-pathwaysLogical.R:341:3', 'test-pathwaysLogical.R:383:3',
  'test-pathwaysLogical.R:425:3', 'test-pathwaysLogical.R:467:3',
  'test-pathwaysLogical.R:509:3', 'test-pathwaysLogical.R:551:3',
  'test-pathwaysLogical.R:593:3', 'test-pathwaysLogical.R:636:3',
  'test-pathwaysLogical.R:679:3', 'test-pathwaysLogical.R:720:3',
  'test-pathwaysLogical.R:762:3', 'test-pathwaysLogical.R:804:3',
  'test-pathwaysLogical.R:847:3', 'test-pathwaysLogical.R:887:3',
  'test-pathwaysLogical.R:927:3', 'test-pathwaysLogical.R:967:3',
  'test-pathwaysLogical.R:1008:3', 'test-pathwaysLogical.R:1050:3',
  'test-pathwaysLogical.R:1091:3', 'test-pathwaysLogical.R:1135:3',
  'test-pathwaysLogical.R:1177:3', 'test-pathwaysLogical.R:1219:3',
  'test-pathwaysLogical.R:1261:3', 'test-pathwaysLogical.R:1305:3',
  'test-pathwaysLogical.R:1350:3', 'test-pathwaysLogical.R:1395:3',
  'test-pathwaysLogical.R:1440:3', 'test-pathwaysLogical.R:1485:3',
  'test-pathwaysLogical.R:1528:3', 'test-pathwaysLogical.R:1574:3',
  'test-pathwaysLogical.R:1620:3', 'test-pathwaysLogical.R:1666:3',
  'test-pathwaysLogical.R:1710:3', 'test-pathwaysLogical.R:1754:3',
  'test-pathwaysLogical.R:1801:3', 'test-pathwaysLogical.R:1857:3',
  'test-pathwaysLogical.R:1912:3',
  'test-pathwaysMultipleTargetsLogical.R:18:3',
  'test-pathwaysMultipleTargetsLogical.R:224:3',
  'test-pathwaysMultipleTargetsLogical.R:315:3',
  'test-plotEventDuration.R:2:3', 'test-plotEventDuration.R:14:3',
  'test-plotEventDuration.R:41:3', 'test-plotEventDuration.R:69:3'

[ FAIL 0 | WARN 2 | SKIP 105 | PASS 26 ]
> 
> proc.time()
   user  system elapsed 
  11.14    0.42   63.62