installing dependencies ‘cluster’, ‘colorspace’, ‘RColorBrewer’, ‘TraMineRextras’, ‘vegan’, ‘WeightedCluster’, ‘xtable’ also installing the dependencies ‘iterators’, ‘digest’, ‘globals’, ‘listenv’, ‘parallelly’, ‘future.apply’, ‘permute’, ‘TraMineR’, ‘doParallel’, ‘foreach’, ‘progressr’, ‘future’, ‘doFuture’, ‘fastcluster’, ‘vegclust’ begin installing package ‘iterators’ begin installing package ‘digest’ begin installing package ‘listenv’ begin installing package ‘globals’ begin installing package ‘parallelly’ begin installing package ‘permute’ begin installing package ‘fastcluster’ begin installing package ‘colorspace’ begin installing package ‘RColorBrewer’ begin installing package ‘xtable’ begin installing package ‘cluster’ * installing *source* package ‘iterators’ ... ** package ‘iterators’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iterators) begin installing package ‘foreach’ * installing *source* package ‘RColorBrewer’ ... ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorBrewer) * installing *source* package ‘listenv’ ... ** package ‘listenv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (listenv) * installing *source* package ‘globals’ ... ** package ‘globals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (globals) * installing *source* package ‘xtable’ ... ** package ‘xtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xtable) * installing *source* package ‘permute’ ... ** package ‘permute’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (permute) * installing *source* package ‘fastcluster’ ... ** package ‘fastcluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ5v6p2/R.INSTALL191de0568b865/fastcluster/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastcluster_R.cpp -o fastcluster_R.o In file included from fastcluster_R.cpp:24: fastcluster.cpp:62: warning: ignoring ‘#pragma STDC FENV_ACCESS’ [-Wunknown-pragmas] 62 | #pragma STDC FENV_ACCESS ON fastcluster.cpp:63: warning: ignoring ‘#pragma messag ’ [-Wunknown-pragmas] 63 | #pragma messag("If there is a warning about unknown #pragma STDC FENV_ACCESS, this can be ignored.") fastcluster.cpp:53:35: note: ‘#pragma message: Use fenv header.’ 53 | #pragma message("Use fenv header.") | ^ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o fastcluster.so fastcluster_R.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ5v6p2/R.INSTALL191de0568b865/fastcluster/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-fastcluster/00new/fastcluster/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastcluster) * installing *source* package ‘foreach’ ... ** package ‘foreach’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foreach) begin installing package ‘doParallel’ * installing *source* package ‘parallelly’ ... ** package ‘parallelly’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8WGG4o/R.INSTALL191de62d3b8124/parallelly/src' gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c 000.init.c -o 000.init.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c calc-serialized-size.c -o calc-serialized-size.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c test_tcp_port.c -o test_tcp_port.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o parallelly.so 000.init.o calc-serialized-size.o test_tcp_port.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8WGG4o/R.INSTALL191de62d3b8124/parallelly/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-parallelly/00new/parallelly/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parallelly) * installing *source* package ‘doParallel’ ... ** package ‘doParallel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doParallel) * installing *source* package ‘cluster’ ... ** package ‘cluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbkhD25/R.INSTALL191dec6bff27a2/cluster/src' gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clara.c -o clara.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c daisy.c -o daisy.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dysta.c -o dysta.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fanny.c -o fanny.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mona.c -o mona.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pam.c -o pam.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sildist.c -o sildist.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spannel.c -o spannel.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c twins.c -o twins.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbkhD25/R.INSTALL191dec6bff27a2/cluster/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-cluster/00new/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cluster) begin installing package ‘vegan’ * installing *source* package ‘colorspace’ ... ** package ‘colorspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcbeHco/R.INSTALL191ddc2863084d/colorspace/src' gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colorspace.c -o colorspace.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o colorspace.so colorspace.o init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcbeHco/R.INSTALL191ddc2863084d/colorspace/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) * installing *source* package ‘digest’ ... ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvjFrSG/R.INSTALL191dd639914ac8/digest/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SpookyV2.cpp -o SpookyV2.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c aes.c -o aes.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c blake3.c -o blake3.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c blake3_dispatch.c -o blake3_dispatch.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c blake3_portable.c -o blake3_portable.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crc32.c -o crc32.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c crc32c.cpp -o crc32c.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c crc32c_portable.cpp -o crc32c_portable.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c digest.c -o digest.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c digest2int.c -o digest2int.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c md5.c -o md5.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pmurhash.c -o pmurhash.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c raes.c -o raes.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha1.c -o sha1.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha2.c -o sha2.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha256.c -o sha256.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spooky_serialize.cpp -o spooky_serialize.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xxhash.c -o xxhash.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o crc32c.o crc32c_portable.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvjFrSG/R.INSTALL191dd639914ac8/digest/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (digest) begin installing package ‘progressr’ begin installing package ‘future’ * installing *source* package ‘progressr’ ... ** package ‘progressr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (progressr) * installing *source* package ‘future’ ... ** package ‘future’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future) begin installing package ‘future.apply’ * installing *source* package ‘future.apply’ ... ** package ‘future.apply’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future.apply) begin installing package ‘doFuture’ * installing *source* package ‘doFuture’ ... ** package ‘doFuture’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doFuture) * installing *source* package ‘vegan’ ... ** package ‘vegan’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZo83gb/R.INSTALL1920b0d2019c/vegan/src' gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c data2hill.c -o data2hill.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c decorana.f -o decorana.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getF.c -o getF.o getF.c: In function ‘do_getF’: getF.c:436:13: warning: ‘wperm’ may be used uninitialized [-Wmaybe-uninitialized] 436 | wcentre(Xorig, qr, wperm, &nr, &nx); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ getF.c:347:13: note: ‘wperm’ was declared here 347 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~ getF.c:435:13: warning: ‘Xorig’ may be used uninitialized [-Wmaybe-uninitialized] 435 | memcpy(qr, Xorig, nr * nx * sizeof(double)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ getF.c:347:21: note: ‘Xorig’ was declared here 347 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~ getF.c:397:44: warning: ‘Zorig’ may be used uninitialized [-Wmaybe-uninitialized] 397 | Zperm[i + nr*j] = Zorig[ki + nr*j]; | ^ getF.c:347:29: note: ‘Zorig’ was declared here 347 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~ getF.c:397:26: warning: ‘Zperm’ may be used uninitialized [-Wmaybe-uninitialized] 397 | Zperm[i + nr*j] = Zorig[ki + nr*j]; | ^ getF.c:347:37: note: ‘Zperm’ was declared here 347 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~ In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:78, from getF.c:11: getF.c:446:22: warning: ‘qrwork’ may be used uninitialized [-Wmaybe-uninitialized] 446 | F77_CALL(dqrdc2)(qr, &nr, &nr, &nx, &qrtol, &qrank, | ^ /home/hornik/tmp/R-d-gcc-xtra/include/R_ext/RS.h:104:25: note: in definition of macro ‘F77_CALL’ 104 | # define F77_CALL(x) x ## _ | ^ getF.c:347:45: note: ‘qrwork’ was declared here 347 | double *wperm, *Xorig, *Zorig, *Zperm, *qrwork, *zqrwork, qrtol=1e-7; | ^~~~~~ getF.c:472:22: warning: ‘resid’ may be used uninitialized [-Wmaybe-uninitialized] 472 | F77_CALL(dqrsl)(qr, &nr, &nr, &qrank, qraux, rY + i*nr, &dummy, | ^ /home/hornik/tmp/R-d-gcc-xtra/include/R_ext/RS.h:104:25: note: in definition of macro ‘F77_CALL’ 104 | # define F77_CALL(x) x ## _ | ^ getF.c:335:13: note: ‘resid’ was declared here 335 | double *resid; | ^~~~~ getF.c:484:17: warning: ‘transY’ may be used uninitialized [-Wmaybe-uninitialized] 484 | transpose(fitted, transY, nr, nr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ getF.c:370:13: note: ‘transY’ was declared here 370 | double *transY; | ^~~~~~ gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c goffactor.c -o goffactor.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c monoMDS.f -o monoMDS.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nestedness.c -o nestedness.o gfortran-14 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c ordering.f -o ordering.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pnpoly.c -o pnpoly.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stepacross.c -o stepacross.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vegdist.c -o vegdist.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o vegan.so data2hill.o decorana.o getF.o goffactor.o init.o monoMDS.o nestedness.o ordering.o pnpoly.o stepacross.o vegdist.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZo83gb/R.INSTALL1920b0d2019c/vegan/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-vegan/00new/vegan/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vegan) begin installing package ‘TraMineR’ begin installing package ‘vegclust’ * installing *source* package ‘vegclust’ ... ** package ‘vegclust’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vegclust) * installing *source* package ‘TraMineR’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSQ7byS/R.INSTALL1923d02e6bac0a/TraMineR/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DHDdistance.cpp -o DHDdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LCPdistance.cpp -o LCPdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMSDURSoftdistance.cpp -o NMSDURSoftdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMSMSTSoftdistance.cpp -o NMSMSTSoftdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMSMSTSoftdistanceII.cpp -o NMSMSTSoftdistanceII.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMSMSTdistance.cpp -o NMSMSTdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMSdistance.cpp -o NMSdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c OMPerdistance.cpp -o OMPerdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c OMPerdistanceII.cpp -o OMPerdistanceII.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c OMVIdistance.cpp -o OMVIdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c OMdistance.cpp -o OMdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c OMvdistance.cpp -o OMvdistance.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TWEDdistance.cpp -o TWEDdistance.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c checktriangleineq.c -o checktriangleineq.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c chisq.cpp -o chisq.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c constraint.cpp -o constraint.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dist2matrix.c -o dist2matrix.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distancecalculator.cpp -o distancecalculator.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distancefunctions.cpp -o distancefunctions.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distanceobject.cpp -o distanceobject.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c eventdictionary.cpp -o eventdictionary.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c eventseq.cpp -o eventseq.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ffunctions.c -o ffunctions.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c inertiafunctions.c -o inertiafunctions.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c prefixtree.cpp -o prefixtree.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c seqedist.cpp -o seqedist.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tmrsequence.cpp -o tmrsequence.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c traminerdebug.cpp -o traminerdebug.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c treeeventmap.cpp -o treeeventmap.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c treeeventnode.cpp -o treeeventnode.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wcorr.c -o wcorr.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c weightedinertia.cpp -o weightedinertia.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o TraMineR.so DHDdistance.o LCPdistance.o NMSDURSoftdistance.o NMSMSTSoftdistance.o NMSMSTSoftdistanceII.o NMSMSTdistance.o NMSdistance.o OMPerdistance.o OMPerdistanceII.o OMVIdistance.o OMdistance.o OMvdistance.o TWEDdistance.o checktriangleineq.o chisq.o constraint.o dist2matrix.o distancecalculator.o distancefunctions.o distanceobject.o eventdictionary.o eventseq.o ffunctions.o inertiafunctions.o init.o prefixtree.o seqedist.o tmrsequence.o traminerdebug.o treeeventmap.o treeeventnode.o wcorr.o weightedinertia.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSQ7byS/R.INSTALL1923d02e6bac0a/TraMineR/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-TraMineR/00new/TraMineR/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TraMineR) begin installing package ‘TraMineRextras’ begin installing package ‘WeightedCluster’ * installing *source* package ‘TraMineRextras’ ... ** package ‘TraMineRextras’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0hpBg7/R.INSTALL1925825353a973/TraMineRextras/src' gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c seqstart.cpp -o seqstart.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o TraMineRextras.so init.o seqstart.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0hpBg7/R.INSTALL1925825353a973/TraMineRextras/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-TraMineRextras/00new/TraMineRextras/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TraMineRextras) * installing *source* package ‘WeightedCluster’ ... ** package ‘WeightedCluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpp97XB4/R.INSTALL192584593626fe/WeightedCluster/src' g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PAM.cpp -o PAM.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PAMonce.cpp -o PAMonce.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PAMoncebody.cpp -o PAMoncebody.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cluster.cpp -o cluster.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c clusterquality.cpp -o clusterquality.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c clusterqualitybody.cpp -o clusterqualitybody.o gcc-14 -fsanitize=address,undefined -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmedoid.cpp -o kmedoid.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmedoidbase.cpp -o kmedoidbase.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmedoidbasebody.cpp -o kmedoidbasebody.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmedoidbody.cpp -o kmedoidbody.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o WeightedCluster.so PAM.o PAMonce.o PAMoncebody.o cluster.o clusterquality.o clusterqualitybody.o init.o kmedoid.o kmedoidbase.o kmedoidbasebody.o kmedoidbody.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp97XB4/R.INSTALL192584593626fe/WeightedCluster/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-WeightedCluster/00new/WeightedCluster/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WeightedCluster) checking TraMineR_2.2-11.tar.gz ... Depends: Package: TraMineR Depends: R (>= 3.0.0) Imports: utils, graphics, grDevices, stats, cluster, colorspace, RColorBrewer, boot, vegan Timings: user system elapsed TraMineR 475.717 26.858 504.67 Results: Check status summary: OK Source packages 1 Check results summary: TraMineR ... OK