* using log directory 'd:/RCompile/CRANincoming/R-devel/TestGenerator.Rcheck'
* using R version 4.6.0 beta (2026-04-15 r89885 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-04-16 12:15:33 UTC
* checking for file 'TestGenerator/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TestGenerator' version '0.6.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TestGenerator' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [89m] ERROR
  Running 'testthat.R' [89m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(TestGenerator)
  > 
  > test_check("TestGenerator")
  v All tables are valid
  v All tables are valid
  v All tables are valid. Non-standard table(s) in test data: pregnancy
  x The following tables are invalid: pregnancy
  v All tables are valid
  v Unit Test Definition Created Successfully: 'test'
  v All tables are valid. Non-standard table(s) in test data: pregnancy
  v Unit Test Definition Created Successfully: 'pregnancy'
  v All tables are valid
  v Unit Test Definition Created Successfully: 'test'
  trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/empty_cdm_5.4.zip'
  Content type 'application/zip' length 772029174 bytes (736.3 MB)
  =========================================
  downloaded 616.7 MB
  
  Saving _problems/test-patients-94.R
  v All tables are valid. Non-standard table(s) in test data: pregnancy
  v Unit Test Definition Created Successfully: 'pregnancy'
  Creating CDM database D:\temp\2026_04_16_14_15_17_29443\RtmpMzhS2g/empty_cdm_5.4.zip
  Saving _problems/test-patients-104.R
  v All tables are valid
  v Unit Test Definition Created Successfully: 'test'
  Creating CDM database D:\temp\2026_04_16_14_15_17_29443\RtmpMzhS2g/empty_cdm_5.4.zip
  Saving _problems/test-patients-115.R
  v All tables are valid
  v Unit Test Definition Created Successfully: 'test'
  Creating CDM database D:\temp\2026_04_16_14_15_17_29443\RtmpMzhS2g/empty_cdm_5.4.zip
  Saving _problems/test-patients-125.R
  v Unit Test Definition Created Successfully: 'mimic_sample'
  Timeout was reached [physionet.org]:
  Operation timed out after 100004 milliseconds with 6979584 out of 10786504 bytes received
  Timeout was reached [physionet.org]:
  Operation timed out after 100042 milliseconds with 9191406 out of 10786504 bytes received
  Timeout was reached [physionet.org]:
  Operation timed out after 100003 milliseconds with 8011722 out of 10786504 bytes received
  v All tables are valid. Non-standard table(s) in test data: pregnancy
  v Unit Test Definition Created Successfully: 'pregnancy'
  Creating CDM database D:\temp\2026_04_16_14_15_17_29443\RtmpMzhS2g/empty_cdm_5.4.zip
  Saving _problems/test-patients-228.R
  v All tables are valid. Non-standard table(s) in test data: pregnancy
  v Unit Test Definition Created Successfully: 'pregnancy'
  [ FAIL 5 | WARN 10 | SKIP 4 | PASS 24 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • empty test (3): 'test-patients.R:147:1', 'test-patients.R:171:1',
    'test-patients.R:202:1'
  • manual test (1): 'test-utilsCdm.R:2:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-patients.R:94:3'): Patients to CDM xlsx function ───────────────
  Error in `utils::download.file(url = url, destfile = file.path(pathToData, zipName), mode = "wb", method = "auto", quiet = FALSE, extra = list(progressfunction = function(downloaded, total) {     progress <- min(1, downloaded/total)     cli::cli_progress_update(id = pb, set = progress) }))`: download from 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/empty_cdm_5.4.zip' failed
  Backtrace:
      ▆
   1. └─TestGenerator::patientsCDM(pathJson = NULL, testName = "pregnancy") at test-patients.R:94:3
   2.   └─CDMConnector::downloadEunomiaData(...)
   3.     ├─withr::with_options(...)
   4.     │ └─base::force(code)
   5.     └─utils::download.file(...)
  ── Error ('test-patients.R:104:3'): Patients to CDM xlsx function pregnancy extra table ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = structure("Data file does not contain any .parquet files to load into the database!\nTry removing the file D:\\temp\\2026_04_16_14_15_17_29443\\RtmpMzhS2g/empty_cdm_5.4.zip.", class = c("glue", "character")), trace = structure(list(call = list(TestGenerator::patientsCDM(pathJson = NULL, testName = "pregnancy"), DBI::dbConnect(duckdb::duckdb(CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion))), duckdb::duckdb(CDMConnector::eunomiaDir(datasetName = "empty_cdm",      cdmVersion = cdmVersion)), path_normalize(dbdir), CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion), rlang::abort(glue::glue("Data file does not contain any .parquet files to load into the database!\nTry removing the file {archiveLocation}."))), parent = c(0L, 1L, 1L, 3L, 1L, 5L), visible = c(TRUE, TRUE, TRUE, TRUE, TRUE, FALSE), namespace = c("TestGenerator", "DBI", "duckdb", "duckdb", "CDMConnector", "rlang"), scope = c("::", "::", "::", ":::", "::", "::"), error_frame = c(FALSE,  FALSE, FALSE, FALSE, TRUE, FALSE)), row.names = c(NA, -6L), version = 2L, class = c("rlang_trace", "rlib_trace", "tbl", "data.frame")), parent = NULL, rlang = list(inherit = TRUE), call = CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)), class = c("rlang_error", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': Data file does not contain any .parquet files to load into the database!
  Try removing the file D:\temp\2026_04_16_14_15_17_29443\RtmpMzhS2g/empty_cdm_5.4.zip.
  Backtrace:
      ▆
   1. ├─TestGenerator::patientsCDM(pathJson = NULL, testName = "pregnancy") at test-patients.R:104:3
   2. │ ├─DBI::dbConnect(...)
   3. │ ├─duckdb::duckdb(...)
   4. │ │ └─duckdb:::path_normalize(dbdir)
   5. │ └─CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)
   6. │   └─rlang::abort(glue::glue("Data file does not contain any .parquet files to load into the database!\nTry removing the file {archiveLocation}."))
   7. │     └─rlang:::signal_abort(cnd, .file)
   8. │       └─base::signalCondition(cnd)
   9. └─base (local) `<fn>`(`<rlng_rrr>`)
  ── Error ('test-patients.R:115:3'): Read patients empty tables xl ──────────────
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = structure("Data file does not contain any .parquet files to load into the database!\nTry removing the file D:\\temp\\2026_04_16_14_15_17_29443\\RtmpMzhS2g/empty_cdm_5.4.zip.", class = c("glue", "character")), trace = structure(list(call = list(TestGenerator::patientsCDM(pathJson = NULL, testName = "test"), DBI::dbConnect(duckdb::duckdb(CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion))), duckdb::duckdb(CDMConnector::eunomiaDir(datasetName = "empty_cdm",      cdmVersion = cdmVersion)), path_normalize(dbdir), CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion), rlang::abort(glue::glue("Data file does not contain any .parquet files to load into the database!\nTry removing the file {archiveLocation}."))), parent = c(0L, 1L, 1L, 3L, 1L, 5L), visible = c(TRUE, TRUE, TRUE, TRUE, TRUE, FALSE), namespace = c("TestGenerator", "DBI", "duckdb", "duckdb", "CDMConnector", "rlang"), scope = c("::", "::", "::", ":::", "::", "::"), error_frame = c(FALSE,  FALSE, FALSE, FALSE, TRUE, FALSE)), row.names = c(NA, -6L), version = 2L, class = c("rlang_trace", "rlib_trace", "tbl", "data.frame")), parent = NULL, rlang = list(inherit = TRUE), call = CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)), class = c("rlang_error", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': Data file does not contain any .parquet files to load into the database!
  Try removing the file D:\temp\2026_04_16_14_15_17_29443\RtmpMzhS2g/empty_cdm_5.4.zip.
  Backtrace:
      ▆
   1. ├─TestGenerator::patientsCDM(pathJson = NULL, testName = "test") at test-patients.R:115:3
   2. │ ├─DBI::dbConnect(...)
   3. │ ├─duckdb::duckdb(...)
   4. │ │ └─duckdb:::path_normalize(dbdir)
   5. │ └─CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)
   6. │   └─rlang::abort(glue::glue("Data file does not contain any .parquet files to load into the database!\nTry removing the file {archiveLocation}."))
   7. │     └─rlang:::signal_abort(cnd, .file)
   8. │       └─base::signalCondition(cnd)
   9. └─base (local) `<fn>`(`<rlng_rrr>`)
  ── Error ('test-patients.R:125:3'): Read patients empty xl ─────────────────────
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = structure("Data file does not contain any .parquet files to load into the database!\nTry removing the file D:\\temp\\2026_04_16_14_15_17_29443\\RtmpMzhS2g/empty_cdm_5.4.zip.", class = c("glue", "character")), trace = structure(list(call = list(TestGenerator::patientsCDM(pathJson = NULL, testName = "test"), DBI::dbConnect(duckdb::duckdb(CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion))), duckdb::duckdb(CDMConnector::eunomiaDir(datasetName = "empty_cdm",      cdmVersion = cdmVersion)), path_normalize(dbdir), CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion), rlang::abort(glue::glue("Data file does not contain any .parquet files to load into the database!\nTry removing the file {archiveLocation}."))), parent = c(0L, 1L, 1L, 3L, 1L, 5L), visible = c(TRUE, TRUE, TRUE, TRUE, TRUE, FALSE), namespace = c("TestGenerator", "DBI", "duckdb", "duckdb", "CDMConnector", "rlang"), scope = c("::", "::", "::", ":::", "::", "::"), error_frame = c(FALSE,  FALSE, FALSE, FALSE, TRUE, FALSE)), row.names = c(NA, -6L), version = 2L, class = c("rlang_trace", "rlib_trace", "tbl", "data.frame")), parent = NULL, rlang = list(inherit = TRUE), call = CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)), class = c("rlang_error", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': Data file does not contain any .parquet files to load into the database!
  Try removing the file D:\temp\2026_04_16_14_15_17_29443\RtmpMzhS2g/empty_cdm_5.4.zip.
  Backtrace:
      ▆
   1. ├─TestGenerator::patientsCDM(pathJson = NULL, testName = "test") at test-patients.R:125:3
   2. │ ├─DBI::dbConnect(...)
   3. │ ├─duckdb::duckdb(...)
   4. │ │ └─duckdb:::path_normalize(dbdir)
   5. │ └─CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)
   6. │   └─rlang::abort(glue::glue("Data file does not contain any .parquet files to load into the database!\nTry removing the file {archiveLocation}."))
   7. │     └─rlang:::signal_abort(cnd, .file)
   8. │       └─base::signalCondition(cnd)
   9. └─base (local) `<fn>`(`<rlng_rrr>`)
  ── Error ('test-patients.R:228:3'): Patients to CDM version 5.4 ────────────────
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = structure("Data file does not contain any .parquet files to load into the database!\nTry removing the file D:\\temp\\2026_04_16_14_15_17_29443\\RtmpMzhS2g/empty_cdm_5.4.zip.", class = c("glue", "character")), trace = structure(list(call = list(TestGenerator::patientsCDM(pathJson = NULL, testName = "pregnancy", cdmVersion = cdmVersion), DBI::dbConnect(duckdb::duckdb(CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion))),      duckdb::duckdb(CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)), path_normalize(dbdir), CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion), rlang::abort(glue::glue("Data file does not contain any .parquet files to load into the database!\nTry removing the file {archiveLocation}."))), parent = c(0L, 1L, 1L, 3L, 1L, 5L), visible = c(TRUE, TRUE, TRUE, TRUE, TRUE, FALSE), namespace = c("TestGenerator", "DBI", "duckdb", "duckdb", "CDMConnector",  "rlang"), scope = c("::", "::", "::", ":::", "::", "::"), error_frame = c(FALSE, FALSE, FALSE, FALSE, TRUE, FALSE)), row.names = c(NA, -6L), version = 2L, class = c("rlang_trace", "rlib_trace", "tbl", "data.frame")), parent = NULL, rlang = list(inherit = TRUE), call = CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)), class = c("rlang_error", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': Data file does not contain any .parquet files to load into the database!
  Try removing the file D:\temp\2026_04_16_14_15_17_29443\RtmpMzhS2g/empty_cdm_5.4.zip.
  Backtrace:
      ▆
   1. ├─TestGenerator::patientsCDM(...) at test-patients.R:228:3
   2. │ ├─DBI::dbConnect(...)
   3. │ ├─duckdb::duckdb(...)
   4. │ │ └─duckdb:::path_normalize(dbdir)
   5. │ └─CDMConnector::eunomiaDir(datasetName = "empty_cdm", cdmVersion = cdmVersion)
   6. │   └─rlang::abort(glue::glue("Data file does not contain any .parquet files to load into the database!\nTry removing the file {archiveLocation}."))
   7. │     └─rlang:::signal_abort(cnd, .file)
   8. │       └─base::signalCondition(cnd)
   9. └─base (local) `<fn>`(`<rlng_rrr>`)
  
  [ FAIL 5 | WARN 10 | SKIP 4 | PASS 24 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR