test_that("otSweep runs and returns valid output", { data("sample_data", package = "TSQCA") dat <- sample_data res <- otSweep( dat = dat, Yvar = "Y", Xvars = c("X1", "X2", "X3"), sweep_range = 6:8, thrX = c(X1 = 7, X2 = 7, X3 = 7), return_details = FALSE ) expect_s3_class(res, "data.frame") expect_true(nrow(res) > 0) required_cols <- c("expression", "inclS", "covS") expect_true(all(required_cols %in% colnames(res))) thr_cols <- grep("thr|threshold", colnames(res), ignore.case = TRUE, value = TRUE) expect_true(length(thr_cols) >= 1) })