* using log directory 'd:/RCompile/CRANincoming/R-devel/TSDT.Rcheck'
* using R Under development (unstable) (2025-01-06 r87534 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'TSDT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TSDT' version '1.0.8'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Brian Denton <denton_brian_david@lilly.com>'

Found the following (possibly) invalid URLs:
  URL: https://academic.oup.com/biomet/article/77/1/147/271076
    From: man/mean_deviance_residuals.Rd
    Status: 403
    Message: Forbidden
Please use DOIs for the following publisher URLs:
  https://academic.oup.com/biomet/article/77/1/147/271076
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'TSDT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] NOTE
Found if() conditions comparing class() to string:
File 'TSDT/R/TSDT_CutpointDistribution.ClassDefinition.R': if (is.null(Cutpoints) || class(Cutpoints) != "hash") ...
File 'TSDT/R/TSDT_helper_functions.R': if (class(parameters[[p1]]) != "list") ...
File 'TSDT/R/TSDT_helper_functions.R': if (class(x) != "TSDT" || class(y) != "TSDT") ...
File 'TSDT/R/TSDT_scoring_functions.R': if (class(response) != "Surv") ...
File 'TSDT/R/TSDT_scoring_functions.R': if (class(quantile__) != "logical") ...
File 'TSDT/R/TSDT_scoring_functions.R': if (class(response) != "Surv") ...
File 'TSDT/R/TSDT_scoring_functions.R': if (class(response) != "Surv") ...
File 'TSDT/R/TSDT_scoring_functions.R': if (class(response) != "Surv") ...
File 'TSDT/R/tree_functions.R': if (class(covariates) != "data.frame") ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs