* using log directory ‘/srv/hornik/tmp/CRAN_pretest/TSDT.Rcheck’
* using R Under development (unstable) (2025-01-06 r87534)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.6 (1)
    Debian flang-new version 19.1.6 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘TSDT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TSDT’ version ‘1.0.8’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Brian Denton <denton_brian_david@lilly.com>’

Found the following (possibly) invalid URLs:
  URL: https://academic.oup.com/biomet/article/77/1/147/271076
    From: man/mean_deviance_residuals.Rd
    Status: 403
    Message: Forbidden
Please use DOIs for the following publisher URLs:
  https://academic.oup.com/biomet/article/77/1/147/271076
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘TSDT’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] NOTE
Found if() conditions comparing class() to string:
File ‘TSDT/R/TSDT_CutpointDistribution.ClassDefinition.R’: if (is.null(Cutpoints) || class(Cutpoints) != "hash") ...
File ‘TSDT/R/TSDT_helper_functions.R’: if (class(parameters[[p1]]) != "list") ...
File ‘TSDT/R/TSDT_helper_functions.R’: if (class(x) != "TSDT" || class(y) != "TSDT") ...
File ‘TSDT/R/TSDT_scoring_functions.R’: if (class(response) != "Surv") ...
File ‘TSDT/R/TSDT_scoring_functions.R’: if (class(quantile__) != "logical") ...
File ‘TSDT/R/TSDT_scoring_functions.R’: if (class(response) != "Surv") ...
File ‘TSDT/R/TSDT_scoring_functions.R’: if (class(response) != "Surv") ...
File ‘TSDT/R/TSDT_scoring_functions.R’: if (class(response) != "Surv") ...
File ‘TSDT/R/tree_functions.R’: if (class(covariates) != "data.frame") ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [8s/8s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs