hush = function(code) { sink("NUL") # use /dev/null in UNIX tmp = code sink() return(tmp) } # Normal one sample ---- test_that("Run examples for one sample", { set.seed(3164964) samp1 = rnorm(33) expect_error(wilcox_TOST()) test1 = wilcox_TOST(x = samp1, low_eqbound = -.5, high_eqbound = .5) test1_ses = ses_calc(x = samp1, alpha = .1) expect_equal(test1$effsize$estimate[2], test1_ses$estimate) expect_equal(test1$effsize$lower.ci[2], test1_ses$lower.ci) expect_equal(test1$effsize$upper.ci[2], test1_ses$upper.ci) test1_ses = boot_ses_calc(x = samp1, alpha = .1, boot_ci = "s") test1_ses = boot_ses_calc(x = samp1, alpha = .1, boot_ci = "p") test1_ses = boot_ses_calc(x = samp1, alpha = .1) ash = as_htest(test1) test3 = wilcox_TOST(x = samp1, low_eqbound = -.5, high_eqbound = .5, hypothesis = "MET") ash = as_htest(test3) expect_equal(1-test1$TOST$p.value[2], test3$TOST$p.value[2], tolerance = .001) expect_equal(1-test1$TOST$p.value[3], test3$TOST$p.value[3], tolerance = .001) prtest = hush(print(test3)) }) # Two sample ---- test_that("Run examples for two sample", { set.seed(651466441) samp1 = rnorm(25) samp2 = rnorm(25) df_samp = data.frame(y = c(samp1,samp2), group = c(rep("g1",25), rep("g2",25))) expect_error(wilcox_TOST()) test1 = wilcox_TOST(x = samp1, y = samp2, low_eqbound = -.5, high_eqbound = .5) ash = as_htest(test1) test3 = wilcox_TOST(x = samp1, y = samp2, low_eqbound = -.5, high_eqbound = .5, hypothesis = "MET") ash = as_htest(test3) test1 = wilcox_TOST(formula = y ~ group, data = df_samp, low_eqbound = -.5, high_eqbound = .5) test1_smd = ses_calc(formula = y ~ group, data = df_samp) test1_smd_boot = boot_ses_calc(formula = y ~ group, data = df_samp, R = 99) expect_equal(test1_smd_boot$estimate, test1_smd$estimate) expect_error(ses_calc(formula = y ~ group, data = df_samp, alpha = 1.1)) test3 = wilcox_TOST(formula = y ~ group, data = df_samp, low_eqbound = -.5, high_eqbound = .5, hypothesis = "MET") expect_equal(1-test1$TOST$p.value[2], test3$TOST$p.value[2], tolerance = .003) expect_equal(1-test1$TOST$p.value[3], test3$TOST$p.value[3], tolerance = .003) prtest = hush(print(test3)) }) test_that("Run examples for paired samples", { set.seed(789461245) samp1 = rnorm(25) expect_error(wilcox_TOST(x = samp1, eqb = c(-1,1,.5))) expect_error(wilcox_TOST(x = samp1, eqb = c(-1,1), alpha= 1.22)) expect_error(wilcox_TOST(x = samp1, eqb = 1, hypothesis = "DDDDD")) expect_error(wilcox_TOST(Sepal.Width ~ Species, data = iris)) samp2 = rnorm(25) cor12 = stats::cor(samp1,samp2) df_samp = data.frame(y = c(samp1,samp2), group = c(rep("g1",25), rep("g2",25))) expect_error(wilcox_TOST()) test1 = wilcox_TOST(x = samp1, y = samp2, paired = TRUE, low_eqbound = -.5, high_eqbound = .5) test1 = wilcox_TOST(x = samp1, y = samp2, paired = TRUE, eqb = c(-.5, .5)) test1 = wilcox_TOST(x = samp1, y = samp2, paired = TRUE, eqb = .5) test1_ses = boot_ses_calc(x = samp1, y = samp2, paired = TRUE) test3 = wilcox_TOST(x = samp1, y = samp2, paired = TRUE, low_eqbound = -.5, high_eqbound = .5, hypothesis = "MET") expect_equal(1-test1$TOST$p.value[2], test3$TOST$p.value[2], tolerance = .005) expect_equal(1-test1$TOST$p.value[3], test3$TOST$p.value[3], tolerance = .005) prtest = hush(print(test1)) }) test_that("Check rbs",{ set.seed(1847501) z1 = rnorm(35) z2 = rnorm(35) # Two Sample ------ rbs1 = TOSTER:::rbs_calc(x=z1, y=z2, mu=0, paired=FALSE) rbs2 = TOSTER:::rbs_calc(x=z2, y=z1, mu=0, paired=FALSE) expect_equal(abs(rbs1),abs(rbs2)) # Paired Sample ------ rbs1 = TOSTER:::rbs_calc(x=z1, y=z2, mu=0, paired=TRUE) rbs2 = TOSTER:::rbs_calc(x=z2, y=z1, mu=0, paired=TRUE) expect_equal(abs(rbs1),abs(rbs2)) # Two Sample ------ rbs1 = TOSTER:::rbs_calc(x=z1, y=z2, mu=.5, paired=FALSE) rbs2 = TOSTER:::rbs_calc(x=z2, y=z1, mu=.5, paired=FALSE) #expect_equal(abs(rbs1),abs(rbs2)) # Paired Sample ------ rbs1 = TOSTER:::rbs_calc(x=z1, y=z2, mu=.5, paired=TRUE) rbs2 = TOSTER:::rbs_calc(x=z2, y=z1, mu=.5, paired=TRUE) #expect_equal(abs(rbs1),abs(rbs2)) x1 = 1.25 expect_equal(TOSTER:::pr_to_odds(TOSTER:::odds_to_pr(x1)), 1.25) rb1 = .75 expect_equal(TOSTER:::cstat_to_rb(TOSTER:::rb_to_cstat(rb1)), rb1) z1 = .45 expect_equal(TOSTER:::rho_to_z(TOSTER:::z_to_rho(z1)), z1) test1= TOSTER:::ranktransform(z1,sign=FALSE,method="first") test1= TOSTER:::ranktransform(z1,sign=TRUE,method="first") test2 = TOSTER:::ranktransform(1) test25 = TOSTER:::ranktransform(c(7,7,7,7,7)) test3 = TOSTER:::ranktransform(c(NA,NA,NA)) test3 = TOSTER:::ranktransform(c(TRUE,TRUE,FALSE)) })