* using log directory 'd:/RCompile/CRANincoming/R-devel/TDIagree.Rcheck'
* using R Under development (unstable) (2025-04-13 r88141 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'TDIagree/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TDIagree' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Anna Felip-Badia <annafelipibadia@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  TDI (10:41, 11:81)

The Title field should be in title case. Current version is:
  'Assessment of agreement for quantitative normal and non-normal data using the total deviation index'
In title case that is:
  'Assessment of Agreement for Quantitative Normal and Non-Normal Data using the Total Deviation Index'

Found the following URLs which should use \doi (with the DOI name only):
  File 'TDIagree-package.Rd':
    https://doi.org/10.1002/(SICI)1097-0258(20000130)19:2<255::AID-SIM293>3.0.CO;2-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TDIagree' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'print.tdi.R'
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [54s] ERROR
Running examples in 'TDIagree-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: print.tdi
> ### Title: Printing tdi objects
> ### Aliases: print.tdi
> 
> ### ** Examples
> 
> # normal data
> set.seed(2025)
> 
> n <- 100
> y_A1 <- rnorm(n, 50, 10) # rater A, replicate 1
> y_A2 <- rnorm(n, 50, 10) # rater A, replicate 2
> y_B1 <- rnorm(n, 30, 15) # rater B, replicate 1
> y_B2 <- rnorm(n, 30, 15) # rater B, replicate 2
> 
> ex_data <- data.frame(y = c(y_A1, y_A2, y_B1, y_B2), rater = factor(rep(c("A", "B"), each = 2*n)),
+                       replicate = factor(rep(rep(1:2, each = n), 2)), subj = factor(rep(1:n, 4)))
> 
> tdi <- TDI(ex_data, y, subj, rater, replicate, p = c(0.8, 0.9),
+            method = c("Choudhary P", "Escaramis et al.",
+                       "Choudhary NP", "Perez-Jaume and Carrasco"))
> tdi
Error in process_text(label, context) : 
  The package "katex" (>= 1.4.1) is required to render equations in HTML
tables.
Calls: <Anonymous> ... dt_boxhead_build -> lapply -> FUN -> process_text -> <Anonymous>
Execution halted
Examples with CPU (user + system) or elapsed time > 10s
          user system elapsed
TDI      19.57   0.30   19.86
plot.tdi 19.48   0.24   19.72
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 2 NOTEs